Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1102
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical pr...    42   4e-04
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    33   0.20 
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    33   0.20 
AF036701-6|AAK68607.1|  139|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z81554-3|CAB04505.1|  255|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC006661-6|AAF39889.1|  312|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z81533-1|CAB04334.1|  329|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside tri...    29   3.2  
Z67755-1|CAA91754.1|  254|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z81051-1|CAB02862.3|  677|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF016654-3|AAB66030.1|  348|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical
           protein C01G12.1 protein.
          Length = 423

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 25/70 (35%), Positives = 34/70 (48%)
 Frame = +1

Query: 67  LISEVERNPCLWNVGCSNYQNKTQRDLAWEDICKRIIPHWNDLNMEDRKQIREYKKKQWN 246
           LI+EV + PCL+N       +  +R   WE I K I P+             E+ KK+W 
Sbjct: 11  LINEVRKYPCLYNHSRRGSGDTMERQRLWESIAKNIDPNC----------AAEFAKKRWL 60

Query: 247 NVRDGYRKYL 276
            +RD YRK L
Sbjct: 61  QLRDRYRKEL 70


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 58   IEELISEVERNPCLWNVGCSNYQNKTQRDLAWEDICKRIIPHWNDLN 198
            +EE + E+      + V   NYQNKT+    W+D+  ++  H N L+
Sbjct: 1426 LEEFLREMREYWQNYEVELVNYQNKTRLIKGWDDLFNKLKEHQNSLS 1472


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 58   IEELISEVERNPCLWNVGCSNYQNKTQRDLAWEDICKRIIPHWNDLN 198
            +EE + E+      + V   NYQNKT+    W+D+  ++  H N L+
Sbjct: 1426 LEEFLREMREYWQNYEVELVNYQNKTRLIKGWDDLFNKLKEHQNSLS 1472


>AF036701-6|AAK68607.1|  139|Caenorhabditis elegans Hypothetical
           protein ZC416.1 protein.
          Length = 139

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +1

Query: 67  LISEVERNPCLWNVGCSNYQNKTQRDLAWEDICKRIIPHWNDLNMEDRKQIREYKKKQWN 246
           LI+EV+  P L++     Y   + R+ AW +I +         N+E      E+ K +W 
Sbjct: 53  LIAEVKARPFLYDQSDEGYNLLSWRNSAWNEIAE---------NLETTS---EHVKTRWK 100

Query: 247 NVRDGYRK 270
            +RD Y+K
Sbjct: 101 TLRDRYKK 108


>Z81554-3|CAB04505.1|  255|Caenorhabditis elegans Hypothetical
           protein F57G4.6 protein.
          Length = 255

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
 Frame = +1

Query: 43  VKMTEIEELISEVERNPCLWNVGCSNYQN--------KTQRDLAW--EDICKRIIPHWND 192
           +K  EI   + EVE+ PCL+++   +Y++        K ++DL +  ED     I  WN 
Sbjct: 32  LKNAEILLFLQEVEQYPCLYDLTDKHYKDREKHDFWIKIEKDLGFLAEDRGSNAIKIWNS 91

Query: 193 LNMEDRKQIREYKKK 237
           L  E    +R  KKK
Sbjct: 92  LKSE---YLRARKKK 103


>AC006661-6|AAF39889.1|  312|Caenorhabditis elegans Hypothetical
           protein H20J04.3 protein.
          Length = 312

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 61  EELISEVERNPCLWNVGCSNYQNKTQRDLAWEDICKRI 174
           + LI EV R+PCL++V    Y++   R  AW  I  ++
Sbjct: 121 KNLILEVRRHPCLYDVRDPKYRHGDCRTQAWGMIIDKL 158


>Z81533-1|CAB04334.1|  329|Caenorhabditis elegans Hypothetical
           protein F36G9.2 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 308 FWAPEVFLFLFRYFL*PSLTLFHCFFLYSLICFLSSMFKSFQCGMILLHI 159
           F++   FL  F +FL    T  H F LY +I    +  K+ +  +I LH+
Sbjct: 10  FFSSPTFLTTFEHFLTVFSTPVHIFGLYCIIYRTPNSMKTVKFSLINLHL 59


>U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside
           triphosphatase protein 1 protein.
          Length = 485

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 7/19 (36%), Positives = 17/19 (89%)
 Frame = +1

Query: 214 QIREYKKKQWNNVRDGYRK 270
           ++R+Y +K WN+++DG+++
Sbjct: 342 EVRKYCQKDWNDIQDGFKR 360


>Z67755-1|CAA91754.1|  254|Caenorhabditis elegans Hypothetical
           protein F54F7.1 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 115 SNYQNKTQRDLAWEDICKRIIPHWNDLNMEDRKQIREYKKKQ 240
           +N Q+KT R LA E + +   PH     M++ K+ R  KKK+
Sbjct: 143 TNVQSKTARQLAKEKVKEYHYPHGITPPMKNAKKRRFRKKKE 184


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +1

Query: 37   IIVKMTEIEELISEVERNPCLWNVGCSNYQNKTQRDLAWEDICKRIIPHWNDLNMEDRKQ 216
            ++ K  E  + + E+E+N  ++NV    Y  + ++ +   D+ +        LNME    
Sbjct: 890  LLEKEREFRKTMEEMEQNEEIFNVLERKYNEQHKKVMKMNDVLREYERKIEQLNMEKTDL 949

Query: 217  IREYKK-KQWNNVRDGYRKYLNR 282
              E +K ++  N +D +   L +
Sbjct: 950  ENENQKLRETQNRQDSHYSNLEK 972


>Z81051-1|CAB02862.3|  677|Caenorhabditis elegans Hypothetical
           protein C55A6.2 protein.
          Length = 677

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 119 LLQPTFHRHGFLSTSEINSSISVIFTMITARAARGR 12
           L++   H HGF+  S  N S++VI+     ++ R R
Sbjct: 81  LIRTMCHSHGFMQCSSKNPSVNVIWMGAPVKSVRMR 116


>AF016654-3|AAB66030.1|  348|Caenorhabditis elegans Hypothetical
           protein C17A2.4 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 281 EIKTPPVPKKKFIYGDDLQFLLPILKNN 364
           EI+   V +K  I+GDDL+F+  + +N+
Sbjct: 205 EIEYKKVHRKVVIFGDDLEFMRSLFENS 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,779,716
Number of Sequences: 27780
Number of extensions: 315488
Number of successful extensions: 948
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)