Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1102
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    29   0.056
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   4.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   4.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.5  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 0.056
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 226 YKKKQWNNVRDGYRKYLNRNKNTSGAQKKIH 318
           YK   +NN  + Y  Y N N N +   KK++
Sbjct: 322 YKYSNYNNYNNNYNNYNNYNNNYNNNYKKLY 352


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 24  SARCYHSEND*NRRINFGGGKKSMSM 101
           S  CY  ++  +RR+ F GGK+++++
Sbjct: 52  SMDCYFRQSWVDRRLAFQGGKETLAL 77


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 226 YKKKQWNNVRDGYRKYLNRNKNTS 297
           YK   +NN  + Y    N N N +
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNNN 112


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 226 YKKKQWNNVRDGYRKYLNRNKNTS 297
           YK   +NN  + Y    N N N +
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNNN 112


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 181 HWNDLNME 204
           HWNDL ME
Sbjct: 633 HWNDLAME 640


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 181 HWNDLNME 204
           HWNDL ME
Sbjct: 671 HWNDLAME 678


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,947
Number of Sequences: 438
Number of extensions: 4350
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)