Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1102
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32810.1 68414.m04044 expressed protein                             29   2.2  
At3g09260.1 68416.m01100 glycosyl hydrolase family 1 protein con...    29   3.0  
At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein con...    28   6.8  
At3g03220.1 68416.m00318 expansin, putative (EXP13) similar to e...    27   9.0  

>At1g32810.1 68414.m04044 expressed protein
          Length = 654

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +1

Query: 127 NKTQRDLAWEDICKRIIPHWNDLNME--DRKQIREYKKKQWNNVRDGYR--KYLNRNKNT 294
           NK +R +A+E++C  ++PHW  L     +R     + +   + +R+ +   + ++R   T
Sbjct: 475 NKGKR-MAYEELCNAVLPHWPHLRKHNGERYAYSSHSQAVLDCLRNRHEWARLVDRGPKT 533

Query: 295 SGAQKK 312
           +  +KK
Sbjct: 534 NSGKKK 539


>At3g09260.1 68416.m01100 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           almost identical to beta-glucosidase GI:1732570 from
           [Arabidopsis thaliana]; similar to beta-glucosidase 1
           (GI:12043529) [Arabidopsis thaliana]
          Length = 524

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 55  EIEELISEVERNPCLWNVGCSNYQNKTQRD 144
           ++E  I+E  R P LW++ C  Y  +   D
Sbjct: 54  QVEGAINETCRGPALWDIYCRRYPERCNND 83


>At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 533

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 55  EIEELISEVERNPCLWNVGCSNYQNKTQRD 144
           ++E  ++E  R P +W++ C  Y  K   D
Sbjct: 58  QVEGAVNETCRGPSVWDIYCKKYPEKCNGD 87


>At3g03220.1 68416.m00318 expansin, putative (EXP13) similar to
           expansin precursor GB:AAD13631 from [Lycopersicon
           esculentum]; alpha-expansin gene family, PMID:11641069
          Length = 266

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 339 NCRSSPYMNFFLGTGGVFISI*VLSV 262
           NCR    M F +  GG+FIS+ + +V
Sbjct: 165 NCRKEGSMRFTVDGGGIFISVLITNV 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,669,709
Number of Sequences: 28952
Number of extensions: 281551
Number of successful extensions: 760
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)