Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1101
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    43   3e-05
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    32   0.061
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    27   3.0  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   5.3  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    25   7.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   9.2  
SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi...    25   9.2  

>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 18/48 (37%), Positives = 31/48 (64%)
 Frame = +2

Query: 200 QAKQTLADIEARHADIIKLETSIRELHDMFMDMAMLVESQVNMTPLLI 343
           +A+  L +++ RHADI ++E +I EL  +F DMA +V+ Q  M   ++
Sbjct: 176 EARTALREVQERHADIKRIERTIAELAQLFQDMATMVQEQEPMVDKIV 223


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 32.3 bits (70), Expect = 0.061
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = +2

Query: 464 LNQLIWIQGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARRVSYLF 613
           L+ +I  QGE++  IEY+V +     + A++  + A ++  KAR+ S+ F
Sbjct: 196 LSTIINEQGELVTNIEYNVGNTSTNTKNASRQLQIANEHSRKARKRSFCF 245


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 568 LLCVLCRSLDIVHGMFYMILNAVDHFTLYPY*LIKS-ASTVLLSSFWNIF 422
           LL +LC    +      + ++ ++H +L+P  +I    S+   SSF  IF
Sbjct: 339 LLVILCVGASVTRTGLLLDMDVMEHISLHPLFIISGILSSGAFSSFMGIF 388


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 176 LQIIMETQQAKQTLADIEARHADIIKLETSIRELHD 283
           L+  +  + A Q L   E   A I +LET ++ELH+
Sbjct: 343 LESQLSNKPANQPLGANEKDAAHITELETKLKELHE 378


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +1

Query: 304 ASRKPGQHDAFINLFQFQIYLKQ*IHDYFSETKTRCPCVKKYSKKNLI 447
           ASR+ G H +FI + +FQ+         F +++     V+K++++N +
Sbjct: 183 ASRQLGYHCSFIPVGEFQVRDALKFGKLFIDSEAMSLIVEKFAQRNTL 230


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +1

Query: 175 FTDYHGDSTGEADACRHRSPTRRHHQAGDIDP*APRHVHGHGDASRKPGQH 327
           F D   +     +   H  P   HH+ G+  P  P H H  G+    P  H
Sbjct: 190 FDDEDREFPAHHEPGEHMPPPPMHHKPGEHMPPPPMH-HEPGEHMPPPPMH 239



 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 223 HRSPTRRHHQAGDIDP*APRHVHGHGDASRKPGQH 327
           H  P   HH+ G+  P  P H H  G+    P  H
Sbjct: 232 HMPPPPMHHEPGEHMPPPPMH-HEPGEHMPPPPMH 265



 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 223 HRSPTRRHHQAGDIDP*APRHVHGHGDASRKPGQH 327
           H  P   HH+ G+  P  P H H  G+    P  H
Sbjct: 258 HMPPPPMHHEPGEHMPPPPMH-HEPGEHMPPPPMH 291



 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 223 HRSPTRRHHQAGDIDP*APRHVHGHGDASRKPGQH 327
           H  P   HH+ G+  P  P H H  G+    P  H
Sbjct: 284 HMPPPPMHHEPGEHMPPPPMH-HEPGEHMPPPPMH 317


>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 182 IIMETQQAKQTLADIEARHADIIKLETSIRELHDMFMDMA 301
           ++++T   K+ + D+E  H DI + E  ++   D   D A
Sbjct: 8   LVIKTNVVKRIIKDVELAHIDINEAEKRVQSKIDNGEDSA 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,312
Number of Sequences: 5004
Number of extensions: 42132
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)