Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1101
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83230-8|CAC42303.1|  291|Caenorhabditis elegans Hypothetical pr...    87   1e-17
Z83230-7|CAB05747.1|  291|Caenorhabditis elegans Hypothetical pr...    87   1e-17
AF047885-1|AAD10538.1|  291|Caenorhabditis elegans UNC-64 syntax...    87   1e-17
AB008844-1|BAA23586.1|  291|Caenorhabditis elegans syntaxin C pr...    87   1e-17
AB008843-1|BAA23585.1|  291|Caenorhabditis elegans syntaxin B pr...    87   1e-17
AB008842-1|BAA23584.1|  291|Caenorhabditis elegans syntaxin A pr...    87   1e-17
Z81532-8|CAB04327.2|  248|Caenorhabditis elegans Hypothetical pr...    49   3e-06
U80931-4|AAB38000.1|  287|Caenorhabditis elegans Syntaxin protei...    39   0.003
U00064-2|AAD31934.2|  329|Caenorhabditis elegans Hypothetical pr...    38   0.008
U40941-1|AAA81707.3|  306|Caenorhabditis elegans Syntaxin protei...    35   0.043
Z69661-6|CAA93492.4|  299|Caenorhabditis elegans Hypothetical pr...    33   0.17 

>Z83230-8|CAC42303.1|  291|Caenorhabditis elegans Hypothetical
           protein F56A8.7b protein.
          Length = 291

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 43/55 (78%), Positives = 47/55 (85%)
 Frame = +2

Query: 182 IIMETQQAKQTLADIEARHADIIKLETSIRELHDMFMDMAMLVESQVNMTPLLIY 346
           II +TQQAKQTLADIEARH DI+KLE+SIRELHDMFMDMAMLVESQ  M   + Y
Sbjct: 182 IITDTQQAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEY 236



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)
 Frame = +2

Query: 473 LIWIQGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 598
           L+  QGEM+DRIEY+VEHA ++V  A  DTKKA++YQSKARR
Sbjct: 223 LVESQGEMVDRIEYNVEHAKEFVDRAVADTKKAVQYQSKARR 264


>Z83230-7|CAB05747.1|  291|Caenorhabditis elegans Hypothetical
           protein F56A8.7a protein.
          Length = 291

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 43/55 (78%), Positives = 47/55 (85%)
 Frame = +2

Query: 182 IIMETQQAKQTLADIEARHADIIKLETSIRELHDMFMDMAMLVESQVNMTPLLIY 346
           II +TQQAKQTLADIEARH DI+KLE+SIRELHDMFMDMAMLVESQ  M   + Y
Sbjct: 182 IITDTQQAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEY 236



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)
 Frame = +2

Query: 473 LIWIQGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 598
           L+  QGEM+DRIEY+VEHA ++V  A  DTKKA++YQSKARR
Sbjct: 223 LVESQGEMVDRIEYNVEHAKEFVDRAVADTKKAVQYQSKARR 264


>AF047885-1|AAD10538.1|  291|Caenorhabditis elegans UNC-64 syntaxin
           class B protein.
          Length = 291

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 43/55 (78%), Positives = 47/55 (85%)
 Frame = +2

Query: 182 IIMETQQAKQTLADIEARHADIIKLETSIRELHDMFMDMAMLVESQVNMTPLLIY 346
           II +TQQAKQTLADIEARH DI+KLE+SIRELHDMFMDMAMLVESQ  M   + Y
Sbjct: 182 IITDTQQAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEY 236



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)
 Frame = +2

Query: 473 LIWIQGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 598
           L+  QGEM+DRIEY+VEHA ++V  A  DTKKA++YQSKARR
Sbjct: 223 LVESQGEMVDRIEYNVEHAKEFVDRAVADTKKAVQYQSKARR 264


>AB008844-1|BAA23586.1|  291|Caenorhabditis elegans syntaxin C
           protein.
          Length = 291

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 43/55 (78%), Positives = 47/55 (85%)
 Frame = +2

Query: 182 IIMETQQAKQTLADIEARHADIIKLETSIRELHDMFMDMAMLVESQVNMTPLLIY 346
           II +TQQAKQTLADIEARH DI+KLE+SIRELHDMFMDMAMLVESQ  M   + Y
Sbjct: 182 IITDTQQAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEY 236



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)
 Frame = +2

Query: 473 LIWIQGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 598
           L+  QGEM+DRIEY+VEHA ++V  A  DTKKA++YQSKARR
Sbjct: 223 LVESQGEMVDRIEYNVEHAKEFVDRAVADTKKAVQYQSKARR 264


>AB008843-1|BAA23585.1|  291|Caenorhabditis elegans syntaxin B
           protein.
          Length = 291

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 43/55 (78%), Positives = 47/55 (85%)
 Frame = +2

Query: 182 IIMETQQAKQTLADIEARHADIIKLETSIRELHDMFMDMAMLVESQVNMTPLLIY 346
           II +TQQAKQTLADIEARH DI+KLE+SIRELHDMFMDMAMLVESQ  M   + Y
Sbjct: 182 IITDTQQAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEY 236



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)
 Frame = +2

Query: 473 LIWIQGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 598
           L+  QGEM+DRIEY+VEHA ++V  A  DTKKA++YQSKARR
Sbjct: 223 LVESQGEMVDRIEYNVEHAKEFVDRAVADTKKAVQYQSKARR 264


>AB008842-1|BAA23584.1|  291|Caenorhabditis elegans syntaxin A
           protein.
          Length = 291

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 43/55 (78%), Positives = 47/55 (85%)
 Frame = +2

Query: 182 IIMETQQAKQTLADIEARHADIIKLETSIRELHDMFMDMAMLVESQVNMTPLLIY 346
           II +TQQAKQTLADIEARH DI+KLE+SIRELHDMFMDMAMLVESQ  M   + Y
Sbjct: 182 IITDTQQAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEY 236



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)
 Frame = +2

Query: 473 LIWIQGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 598
           L+  QGEM+DRIEY+VEHA ++V  A  DTKKA++YQSKARR
Sbjct: 223 LVESQGEMVDRIEYNVEHAKEFVDRAVADTKKAVQYQSKARR 264


>Z81532-8|CAB04327.2|  248|Caenorhabditis elegans Hypothetical
           protein F36F2.4 protein.
          Length = 248

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 22/55 (40%), Positives = 34/55 (61%)
 Frame = +2

Query: 464 LNQLIWIQGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARRVSYLFRCRFI 628
           L  ++  QG+M+D IE +VEHA  YV+   Q+ ++A+ Y  KAR+   L  C F+
Sbjct: 180 LANIVHEQGDMVDSIEANVEHAQIYVEQGAQNVQQAVYYNQKARQKKLLLLCFFV 234


>U80931-4|AAB38000.1|  287|Caenorhabditis elegans Syntaxin protein 4
           protein.
          Length = 287

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 18/40 (45%), Positives = 27/40 (67%)
 Frame = +2

Query: 200 QAKQTLADIEARHADIIKLETSIRELHDMFMDMAMLVESQ 319
           Q K    D++ R  DI+ LE  IRE+ ++F+DM +LV+SQ
Sbjct: 179 QKKALFDDMKNRATDIMILEKQIREVEELFVDMQLLVQSQ 218



 Score = 34.3 bits (75), Expect = 0.075
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 473 LIWIQGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARR 598
           L+  QGE +DRIE  V  A +Y + A Q+ ++A+  + K R+
Sbjct: 214 LVQSQGETVDRIETSVIRAEEYAEQAQQNVRQAVVLRRKNRK 255


>U00064-2|AAD31934.2|  329|Caenorhabditis elegans Hypothetical
           protein ZC155.7 protein.
          Length = 329

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +2

Query: 464 LNQLIWIQGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARRV 601
           L+++I  QG +IDRI+Y+VE     V  A +D  KA +YQ   +++
Sbjct: 262 LSEMIVDQGSVIDRIDYNVEQTSIRVSKAVEDVFKAERYQKGNKKM 307



 Score = 34.7 bits (76), Expect = 0.056
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
 Frame = +2

Query: 98  NQNKTNHTFT--PRIPAKKYFYHKVS*LLQIIM-ETQQAKQTLADIEARHADIIKLETSI 268
           ++N  N+  T  P I A  +    VS   +I M + QQ      ++  R  +++ + TSI
Sbjct: 193 SRNVDNYLITTDPLIDAPNWAELDVSPSTEISMAQLQQFMNNDREVREREKEVMAVNTSI 252

Query: 269 RELHDMFMDMAMLVESQVNMTPLLIY 346
           REL+ +F D++ ++  Q ++   + Y
Sbjct: 253 RELNTLFQDLSEMIVDQGSVIDRIDY 278


>U40941-1|AAA81707.3|  306|Caenorhabditis elegans Syntaxin protein 1
           protein.
          Length = 306

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = +2

Query: 464 LNQLIWIQGEMIDRIEYHVEHAVDYVQTATQDTKKALKYQSKARRV 601
           L+ ++  QGEM+D I   VE+A +Y + A  + ++A   Q +AR++
Sbjct: 231 LHIMVVSQGEMVDSIVNSVENATEYAKQARGNVEEARNLQKRARKM 276


>Z69661-6|CAA93492.4|  299|Caenorhabditis elegans Hypothetical
           protein F48F7.2 protein.
          Length = 299

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 221 DIEARHADIIKLETSIRELHDMFMDMAMLVESQVNM 328
           D++ RH +I  LE +I  L ++F+D+  L E+Q  M
Sbjct: 195 DVKKRHGEIKDLENNIAMLEEIFLDLQHLTEAQDEM 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,130,643
Number of Sequences: 27780
Number of extensions: 245776
Number of successful extensions: 566
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)