Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1100
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.4  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    26   4.5  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   7.9  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 388 NPVLSHG-GLLLDRYGEPPRLREAILRC 468
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 536 GSVTNLITYRAPANTSWESGASALEHALKLESDVTNSIPGGHQDLREQLQRL 691
           G V  LI +     T WES A  +  A K +++   S+P  H +  + +Q L
Sbjct: 53  GRVPTLIDHHNNDYTIWESDAILIYLADKYDTERKISLPRDHPEYYKVIQYL 104


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 274 GRS*GSNESEDSKENSPHLNFSYNHRFFDD--IQKNMC 167
           G S   N S+ + +N PHL+    ++ F+D  I K++C
Sbjct: 363 GESKLPNTSKQASQNLPHLDDELAYQRFEDQVIDKSVC 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,849
Number of Sequences: 5004
Number of extensions: 45470
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)