Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1094
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    28   1.5  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   2.6  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   5.9  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    26   5.9  
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    25   7.8  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 117  NSYYCNENFSTSCLRVTDGIYVAKTVHCLVIFWQTSPVPIISQ*DPKPV 263
            ++YY N   S  C   T+G       H L +F + S + I+   DP P+
Sbjct: 870  SNYYLNARLSRQCRAFTNGFTQIIDPHWLAMFHE-SEIQILVGGDPVPI 917


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -2

Query: 689 TGHKTLARXPTELWSSKD--AGDDSLQDFPPHC*DLAASAPNAGMIRARAEGHHPDACTG 516
           +G K+L+  P+ + SS +  A    L+  P    D      N    R  +   H D+   
Sbjct: 105 SGRKSLSPNPSSVPSSTETKASPTPLESKPQIVSDTTTETSNGTSRRRSSHNQHEDSSPP 164

Query: 515 GSPNVTF 495
             P+VTF
Sbjct: 165 HEPSVTF 171


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 115 WD*KINEFESLPSLNIKHSYVNLI 44
           W   +  F S+ S+  KH Y+N+I
Sbjct: 105 WSYGLTPFFSISSIKTKHDYINII 128


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 373 YSLAG*MNSQLTADKYQSIEITMGMLSLLGPSPRPVEGLQEK 498
           + +AG M + L A ++ S    + +L+LLG  P  +E L E+
Sbjct: 276 HEIAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEE 317


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 455 KDSIPIVISIDWYLSAVSWEFIQPA 381
           K  I + I+ +W+ SA +WE + P+
Sbjct: 18  KQPIGLYINGEWHKSAETWETVDPS 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,197
Number of Sequences: 5004
Number of extensions: 56230
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)