Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1094
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0196 - 14740121-14740468                                         30   2.0  
01_06_0018 + 25609571-25611061                                         29   2.6  
08_01_0511 + 4459685-4459755,4461553-4463653,4463741-4463808,446...    29   3.5  
02_04_0470 - 23183925-23184743,23184929-23185153                       29   3.5  
07_03_0801 - 21604422-21604520,21604932-21604995,21605073-21605167     29   4.6  
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397...    28   8.0  

>11_04_0196 - 14740121-14740468
          Length = 115

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 542 PQHALGSCPRWEHSRRDLSSAGGSLAGCHRLHLWR 646
           P  +  +CP   H+++ LS A  +L GCH+L + R
Sbjct: 50  PHISAANCPLNVHAKKKLSIAYTTLRGCHKLPMPR 84


>01_06_0018 + 25609571-25611061
          Length = 496

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 572 NAGMIRARAEGHHPDACTG-GSPNVTFSCRPSTGLGLGPNKDSIPIVIS 429
           NA +IR+  +  + DA  G GSP ++ +  P   +GL P  +S+P + S
Sbjct: 49  NAAVIRSAVDRAN-DASRGTGSPEISITLFPFPDVGLPPGVESVPGISS 96


>08_01_0511 +
           4459685-4459755,4461553-4463653,4463741-4463808,
           4465156-4465282,4465379-4465429
          Length = 805

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = -2

Query: 437 VISIDWYLSAVSWEFIQPARLYKSLDCQLFKRLQNRVLGSESQQHKGKLYNIKQPKRADR 258
           ++ ID   +  +WE I+ A L  + D ++    +N  + S+   H G +Y+++     D 
Sbjct: 26  LVVIDDVWATEAWETIKLALLSNNCDSRIITTTRNTAVASKCSYHGGYVYHMEPLSFVDS 85

Query: 257 FRV 249
            R+
Sbjct: 86  KRL 88


>02_04_0470 - 23183925-23184743,23184929-23185153
          Length = 347

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 506 SGCHQCKHLDDDPQH-ALGSCPRWEHSRRDLSSAGGSL 616
           S CH  +H DD  +H A G+    E  R  L S GG L
Sbjct: 83  SPCHPLRHADDTLRHSACGTGTSAEARRSRLKSGGGDL 120


>07_03_0801 - 21604422-21604520,21604932-21604995,21605073-21605167
          Length = 85

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 311 QQHKGKLYNIKQPKRADRFRVLLTYYWDW*C 219
           +Q KG L N+K+P   D   + +  +WD  C
Sbjct: 6   EQEKGPLMNMKKPLAVDHTELAMDPWWDGVC 36


>01_01_0542 +
           3975500-3975546,3976273-3976370,3976694-3976830,
           3977518-3977871,3977953-3978041,3978502-3978589,
           3978659-3978734,3978858-3978907,3979032-3979340,
           3979803-3979982,3980086-3980325,3980471-3980582,
           3980931-3981040,3981162-3981311,3981777-3981932,
           3982289-3982405,3982759-3982839,3983338-3983478
          Length = 844

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 301 LCCCDSDPRTRFWSLLN 351
           +C CD D   RFWS+ N
Sbjct: 708 ICSCDGDNEIRFWSINN 724


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,866,378
Number of Sequences: 37544
Number of extensions: 388911
Number of successful extensions: 1029
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)