Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1094
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical p...    31   1.0  
Z46242-13|CAA86328.1|  135|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical
           protein F36H5.1 protein.
          Length = 821

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -2

Query: 362 DCQLFKRLQNRVLGSESQQHKG-KLYNIKQPKRADRFRVLLTYYWDW*CLPKNN*TVNSL 186
           DCQ+   L+ +++    + H+G +L N+K P++ +   +    +  W  + KN  T +S+
Sbjct: 65  DCQIVGILECKIVSDNGETHEGIRLLNMKPPRKIEGPMIDFREFLKWDEMKKNFLTADSV 124


>Z46242-13|CAA86328.1|  135|Caenorhabditis elegans Hypothetical
           protein F35G12.9 protein.
          Length = 135

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 470 QDLWKVCRRKSHSGCHQCKHLDDDPQHALGSC 565
           +D   +CR +  S C+ CK   DD    LG C
Sbjct: 69  EDTCGICRMEFESACNMCKFPGDDCPLVLGIC 100


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 492  LQTFHRSWTWT*QRQHSHCDFYRLVFI 412
            L+  HR   WT +R+H  C  +R+  I
Sbjct: 1940 LRDHHRRSNWTNRREHRDCTIFRITLI 1966


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,127,550
Number of Sequences: 27780
Number of extensions: 319012
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)