Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1093
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845 30 1.0
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 29 1.8
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 29 1.8
03_02_0520 + 9092020-9092079,9092253-9093047 29 3.1
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 28 4.1
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 5.4
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 28 5.4
06_01_0985 - 7646772-7647451,7647957-7648107 28 5.4
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 28 5.4
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307... 27 7.1
05_01_0185 + 1305006-1305218 27 7.1
05_01_0181 - 1280296-1280508 27 7.1
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 27 7.1
01_01_0321 - 2584332-2584661,2584776-2584883,2584987-2585070,258... 27 7.1
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 27 9.4
02_04_0060 - 19345316-19345453,19345718-19345849,19345937-193460... 27 9.4
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 27 9.4
>03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845
Length = 439
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = -3
Query: 306 FIRDLVEKVVNSGY--FCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSRGADPA 133
F+ D + SG+ + LM+ ALR +V F L R W FS G P
Sbjct: 9 FVVDCGRTIFFSGFNAYWLMMMAADPALRGAVATAFQQASAHGLNLARTWAFSDGGDQPL 68
Query: 132 VPTP 121
+P
Sbjct: 69 QSSP 72
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 349 KVHCSAGRVCEINEHGDAMCNCIKDCPYETDSRRMXCTNLNETWQ 483
K +A VCE + G+ + +C + D RM C ++ E WQ
Sbjct: 602 KEEAAAAAVCEGSGGGERVVDCACGA-VDDDGERMACCDICEAWQ 645
>09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -3
Query: 174 LRRWTFSSRGADPAVPTPHTTSVGGANDRDHEGQRKKTLHLAFR*CVSM*SRRQSRRK 1
LR+ T S+ A PA+P+ TS + DH G +K L + ++ + Q + K
Sbjct: 950 LRQHTSSALQAQPALPSGPQTSQQPSAQEDHHGDPQKRLQATLQLAATLLQQIQQQSK 1007
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 219 VLDVFSLRDVPAAELLRRWTFSSR 148
VLD+ +++ +PA +L+RWT +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 282 VVNSGYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 148
+ + G F + L AL+ VLD+ ++ +PA +L+RWT +R
Sbjct: 177 ICSCGQFNRIGILCGHALK--VLDLMNIESLPAQYILKRWTREAR 219
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -3
Query: 405 HGVSVFVDFADTSCAAVDF------QARVFHVDFFVFILFIRDLVEKVVNSGYF 262
HG+ V +FAD S V++ + V+ F + FIR+L E + S F
Sbjct: 984 HGIGVQFEFADASVHIVNYLMSKSSNGALSRVNMFAMLQFIRNLTENNLTSVNF 1037
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 270 GYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 148
G F L AL+ VLD+ +++ +P+ +L+RWT +R
Sbjct: 484 GMFSRTGILCAHALK--VLDLMNIKSLPSQYVLKRWTRGAR 522
>06_01_0985 - 7646772-7647451,7647957-7648107
Length = 276
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 219 VLDVFSLRDVPAAELLRRWTFSSR 148
VLDV +++ +P +L+RWT +R
Sbjct: 240 VLDVMNIKSLPKRYILKRWTREAR 263
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 242 SSKLSDIPCSMCSASEMSPRPSCSDVG 162
S+ SD PC + SAS S P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336
>05_05_0203 -
23229538-23229720,23229808-23230007,23230087-23230718,
23231493-23231844,23231926-23232136,23232413-23232472
Length = 545
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 219 VLDVFSLRDVPAAELLRRWTFSSR 148
+LDV +++ VP +L+RWT ++
Sbjct: 319 ILDVNNIKSVPQQYILKRWTIDAK 342
>05_01_0185 + 1305006-1305218
Length = 70
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 147 GADPAVPTPHTTSVGGAND 91
GADP V +PH GG D
Sbjct: 3 GADPTVSSPHARGFGGGGD 21
>05_01_0181 - 1280296-1280508
Length = 70
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 147 GADPAVPTPHTTSVGGAND 91
GADP V +PH GG D
Sbjct: 3 GADPTVSSPHARGFGGGGD 21
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = -3
Query: 219 VLDVFSLRDVPAAELLRRWTFSSR 148
+LDV +++++P +L+RWT ++
Sbjct: 365 ILDVNNIKEIPKQYILQRWTIDAK 388
>01_01_0321 -
2584332-2584661,2584776-2584883,2584987-2585070,
2585162-2585221,2585322-2585421,2585504-2585906,
2586183-2586480,2587526-2587711
Length = 522
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 228 RHSVLDVFSLRDVPAAELLRRWTFSSRGADPAVPTPHTTSVGGANDRDHE 79
RHS+ + R++ AELL R G+D A+ SVG + + E
Sbjct: 117 RHSICSLGGRRELQGAELLPR--LPCPGSDEALECESKASVGSVSSKGEE 164
>11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 222 SVLDVFSLRDVPAAELLRRWTFSSRGADPA 133
SVL L +P+ + RRWT ++ A P+
Sbjct: 1018 SVLSYLQLEAIPSFCIARRWTMQAKSAFPS 1047
>02_04_0060 -
19345316-19345453,19345718-19345849,19345937-19346005,
19346453-19346551,19346702-19346786,19346890-19346990,
19347294-19347362,19347635-19347675,19348343-19348458,
19348546-19348702,19349266-19349474,19349811-19349914,
19350234-19350381,19350463-19350761,19350844-19351377
Length = 766
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 169 SEQLGRGDISEAEHIEHGMSESLDEKR 249
+E L RG + H +HG E+LDEKR
Sbjct: 588 TEYLSRGSLYRILH-KHGARENLDEKR 613
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/56 (23%), Positives = 22/56 (39%)
Frame = +2
Query: 332 WKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWXAQT*TKPGNXDWXS 499
WK+ ++ +D + +P +A P Q D W + + N DW S
Sbjct: 1768 WKSAGVDASTNKDKESWGNVPASPSDSAWNAAPVSQGDDVWNSAEANESRNKDWKS 1823
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.127 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,154,406
Number of Sequences: 37544
Number of extensions: 255895
Number of successful extensions: 769
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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