Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1093
(530 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L21758-1|AAA16827.1| 264|Caenorhabditis elegans osteonectin pro... 40 0.001
AF036692-3|AAB88325.1| 264|Caenorhabditis elegans Osteonectin (... 40 0.001
U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical pr... 30 0.90
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 30 0.90
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 30 1.2
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 30 1.2
U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical p... 29 2.1
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 3.6
Z54342-16|CAA91156.1| 755|Caenorhabditis elegans Hypothetical p... 28 4.8
Z47072-4|CAA87370.1| 755|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical pr... 27 6.3
AF067944-2|AAY86264.1| 97|Caenorhabditis elegans Hypothetical ... 27 8.4
>L21758-1|AAA16827.1| 264|Caenorhabditis elegans osteonectin
protein.
Length = 264
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 340 PCLKVHCSAGRVCEINEHGDAMCNCIKDCP-YETDSRRMXCTNLNETW 480
PC C G+ C + + G+ C CI CP + D C N N+T+
Sbjct: 52 PCEDHQCGWGKECVVGKKGEPTCECISKCPELDGDPMDKVCANNNQTF 99
>AF036692-3|AAB88325.1| 264|Caenorhabditis elegans Osteonectin
(sparc) related protein1 protein.
Length = 264
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 340 PCLKVHCSAGRVCEINEHGDAMCNCIKDCP-YETDSRRMXCTNLNETW 480
PC C G+ C + + G+ C CI CP + D C N N+T+
Sbjct: 52 PCEDHQCGWGKECVVGKKGEPTCECISKCPELDGDPMDKVCANNNQTF 99
>U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical
protein T09D3.3 protein.
Length = 592
Score = 30.3 bits (65), Expect = 0.90
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 206 NTSSTECLRA--WTRSDTMRQK*PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSA 379
N +S +R WT+ K P+ T F+T + T +T T +T++ S
Sbjct: 410 NVTSPPVIRPSYWTKHRVKSTKEPKTTIFTTTPVPCPTTTSTTTSATTLVPTTSS---ST 466
Query: 380 KSTNTETPC-VTASRTVPTRQT 442
+T T TP VT++ T PT T
Sbjct: 467 TTTTTTTPVPVTSTTTEPTTTT 488
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 30.3 bits (65), Expect = 0.90
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = +2
Query: 278 TTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWX 457
TT +T + MK T +T T+ KST + KST T T ++ PT T
Sbjct: 261 TTPTTPTTMKSTPTTPTTPTTM--KSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTM 318
Query: 458 AQT*TKP 478
T T P
Sbjct: 319 KSTPTTP 325
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +2
Query: 278 TTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQT 442
TT +T + MK T +T T+ KST + KST T T ++ PT T
Sbjct: 375 TTPTTPTTMKSTPTTPTTPTTM--KSTPTTPTTMKSTPTTPTTPTTMKSTPTTPT 427
Score = 27.5 bits (58), Expect = 6.3
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +2
Query: 284 FSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWXAQ 463
++T+ MK+ +T T+ KST + KST T T ++ PT T
Sbjct: 149 WATKPTPSTMKSTPTTPTTI--KSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKS 206
Query: 464 T*TKP 478
T T P
Sbjct: 207 TPTTP 211
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +2
Query: 278 TTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWX 457
TT +T + MK T +T K+ +T + KST T T ++ PT T
Sbjct: 274 TTPTTPTTMKSTPTTPTTMKSTP--TTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTM 331
Query: 458 AQT*TKP 478
T T P
Sbjct: 332 KSTPTTP 338
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +1
Query: 349 KVHCSAGRVCEINEHGDAMCNCIKDCP-YETDSRRMXC 459
K C C + E+ A C C DCP YE + + C
Sbjct: 515 KEKCDFYSACVVGENEKAECKCPDDCPSYEMEEGKEVC 552
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +1
Query: 349 KVHCSAGRVCEINEHGDAMCNCIKDCP-YETDSRRMXC 459
K C C + E+ A C C DCP YE + + C
Sbjct: 523 KEKCDFYSACVVGENEKAECKCPDDCPSYEMEEGKEVC 560
>U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical
protein B0507.1 protein.
Length = 615
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +1
Query: 358 CSAGRVCEINEHGDAMCNCIKDCPYETDSRRMXC 459
CS G C G+ MC C D Y S C
Sbjct: 215 CSGGAACICGARGNCMCECATDFGYTLASDGKTC 248
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +2
Query: 278 TTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPC---VTASRTVPTRQTPD 448
T+ ST S +++ +T+ + A ST++ + +S++T T T S ++PT TP+
Sbjct: 309 TSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQSSSTITSSPSSTTLSTSIPTTTTPE 368
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +2
Query: 278 TTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPC---VTASRTVPTRQTPD 448
T+ ST S +++ +T+ + A ST++ + +S++T T T S ++PT TP+
Sbjct: 309 TSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQSSSTITSSPSSTTLSTSIPTTTTPE 368
>Z54342-16|CAA91156.1| 755|Caenorhabditis elegans Hypothetical
protein F26C11.1 protein.
Length = 755
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 359 AAQDVSAKSTNTETPCVTASRTVPTRQTPDAWXAQT*TKPGNXDW 493
AA+++ +STN ++A + P AW Q P + DW
Sbjct: 414 AAKEIYIRSTNLNRTIISAMSLLYGMFPPGAWNIQGVDYPNDVDW 458
>Z47072-4|CAA87370.1| 755|Caenorhabditis elegans Hypothetical
protein F26C11.1 protein.
Length = 755
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 359 AAQDVSAKSTNTETPCVTASRTVPTRQTPDAWXAQT*TKPGNXDW 493
AA+++ +STN ++A + P AW Q P + DW
Sbjct: 414 AAKEIYIRSTNLNRTIISAMSLLYGMFPPGAWNIQGVDYPNDVDW 458
>Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical
protein F44D12.2 protein.
Length = 342
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = +1
Query: 340 PCLKVHCSAGRV----CEINEHGDAMCNCIKDCPY 432
P ++ C G V C +N HG+ MC C D Y
Sbjct: 59 PTIQKGCVIGEVAPEGCRVNHHGNVMCFC-SDADY 92
>AF067944-2|AAY86264.1| 97|Caenorhabditis elegans Hypothetical
protein K10C9.9 protein.
Length = 97
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 435 LVGTVLDAVTHGVSVFVDFA-DTSCAAVDFQARVFHVDFFVFILFIRDLVEKVVNS 271
++GTVL V HG S+ A +T C + + R +F+ L E +N+
Sbjct: 9 VIGTVLLGVAHGASIPTTVATETKCTSQEEAVRAVQACIMRLGIFLHQLDELHMNN 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.127 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,067,319
Number of Sequences: 27780
Number of extensions: 193573
Number of successful extensions: 694
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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