Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1088
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-13|AAC48300.1|  439|Caenorhabditis elegans Mechanosensory...   163   8e-41
Z71181-2|CAA94895.1|  301|Caenorhabditis elegans Hypothetical pr...    40   0.001
U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical pr...    40   0.002
U21324-6|AAA62562.1|  287|Caenorhabditis elegans Hypothetical pr...    34   0.085
U55368-5|AAA97992.2|  333|Caenorhabditis elegans Hypothetical pr...    34   0.11 
Z81088-3|CAB03128.1|  283|Caenorhabditis elegans Hypothetical pr...    32   0.34 
Z81088-2|CAB03127.1|  297|Caenorhabditis elegans Hypothetical pr...    32   0.34 
U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U00033-13|AAC48300.1|  439|Caenorhabditis elegans Mechanosensory
           abnormality protein14 protein.
          Length = 439

 Score =  163 bits (397), Expect = 8e-41
 Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 2/228 (0%)
 Frame = +2

Query: 23  MRYNELGTTGIKVSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYGQGS 202
           M Y ++  T I++S I  G+AA   ++G  ++   +++++ ++  GINY++TG WY Q  
Sbjct: 83  MNYRQIPGTDIRMSKIGFGAAAIGGMFGNVEDS-IIKIVETAIKQGINYIDTGYWYSQSR 141

Query: 203 SEKVIGKALVGVPRDSYYIGSKVGRYDKDTLKMFDFSAEKTAAGLDNTLSLLGLDYVDL- 379
           SE ++GKAL  +PR +YYI +KVGR++ D  + FDF A+K    L N+L  L L Y+D+ 
Sbjct: 142 SESILGKALSKIPRKAYYISTKVGRFELDYARTFDFRADKILESLTNSLKRLQLTYIDIC 201

Query: 380 -IQVHDITFAPDTSVVLKETLPVLEQAVRDGKARFIGIADYDIDLMKEVVEESGSQDINH 556
            +Q+HD  FAP+ S+VL ETL  LE A   GK R IG+  Y +          G    + 
Sbjct: 202 YVQIHDADFAPNESIVLYETLQALEMAKSSGKIRHIGLTGYPL----------GKLVYSF 251

Query: 557 TLLFRSPRSSIIAYRTILASSXSKGVGVINAAATGMGLLTNKGPQPWH 700
             ++ +P+     Y ++   S ++ + VIN+ A   GLLT KGP PWH
Sbjct: 252 RYVWNAPK----LYFSV-NLSITRNIAVINSGALCWGLLTEKGPPPWH 294


>Z71181-2|CAA94895.1|  301|Caenorhabditis elegans Hypothetical
           protein K07C5.2 protein.
          Length = 301

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
 Frame = +2

Query: 137 IKESLNLGINYLETGPWYGQGSSEKVIGKAL------VGVPRDSYYIGSKVGRYDKDTLK 298
           I+ +L  G    +T   Y    +E  +G +L       G+ R+  +I +KV   +++T+ 
Sbjct: 40  IEAALKSGYRQFDTANLY---KNETFLGNSLKKYLPQFGLTREDVFITTKVRTLNENTV- 95

Query: 299 MFDFSAEKTAAGLDNTLSLLGLDYVDLIQVH---DITFAPDTSVVL-----KETLPVLEQ 454
                 E+T   L N+L+ L  DYVDL+ +H   D     D    +     K     LE+
Sbjct: 96  ------EETEKQLANSLATLQTDYVDLLLIHYPRDRDTGNDDDYEINKSRRKIVWQTLEK 149

Query: 455 AVRDGKARFIGIADYDIDLMKEVVE 529
           A   G+ R IG+++Y++  + E+ E
Sbjct: 150 AKESGRVRSIGVSNYEVYHLVEMFE 174


>U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical
           protein C01G5.5 protein.
          Length = 287

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 14/154 (9%)
 Frame = +2

Query: 104 GKYDEK--RSLELIKESLNLGINYLETGPWYGQGSSEKVIGKALVGV-PR-----DSYYI 259
           G Y+ K  +    + E+L +G    +T  +Y    +EK +G AL  + PR     +  Y+
Sbjct: 16  GTYEAKGDQLFAAVDEALKVGYRSFDTAKYY---ENEKDLGLALKTLLPRHNICSEDIYL 72

Query: 260 GSKVGRYDKDTLKMFDFSAEKTAAGLDNTLSLLGLDYVDLIQVH------DITFAPDTSV 421
            SKV  Y          +AE     ++ +L LL   Y+DL+ VH            +  +
Sbjct: 73  TSKVFPYSSKN------AAELIRKDVNESLELLDRKYLDLVLVHYPRPLDTEDLNENNKM 126

Query: 422 VLKETLPVLEQAVRDGKARFIGIADYDIDLMKEV 523
             K+T   LE+   +GK R IG+++Y+   ++E+
Sbjct: 127 YRKDTWIALEKLHAEGKIRSIGVSNYEPHHIEEM 160


>U21324-6|AAA62562.1|  287|Caenorhabditis elegans Hypothetical
           protein C35D10.6 protein.
          Length = 287

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 30/143 (20%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
 Frame = +2

Query: 131 ELIKESLNLGINYLETGPWYG-QGSSEKVIGKALV--GVPRDSYYIGSKVGRYDKDTLKM 301
           ++I      G  +++T   Y  +    +++ K L   G+ R+  +I SK        L  
Sbjct: 29  QVIDAGFKEGYRFIDTAQVYNNEAKIGRILEKLLPANGLKREDIWITSK--------LAP 80

Query: 302 FDFSAEKTAAGLDNTLSLLGLDYVDLIQVHDITFA-----PDTSVVLKETLPVLEQAVRD 466
            +   +K    ++ +LS L ++Y+DL+ +H    +     P    +  E+  V+ + + +
Sbjct: 81  SNAGVKKARESIEESLSNLKVEYLDLLLIHWPGSSLKSENPANKKLRVESWNVMCEMMAE 140

Query: 467 GKARFIGIADYDIDLMKEVVEES 535
           GK R +G+++++I  ++E+ ++S
Sbjct: 141 GKLRSVGVSNFEICHLEELKKDS 163


>U55368-5|AAA97992.2|  333|Caenorhabditis elegans Hypothetical
           protein T08H10.1 protein.
          Length = 333

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 19/166 (11%)
 Frame = +2

Query: 113 DEKRSLELIKESLNLGINYLETGPWYGQGSSEKVIGKALVGVPRDSYYIGSKVGRYDKDT 292
           DE      ++ +L+ G   ++T   Y    +E +IGK L       Y    K+ R D   
Sbjct: 26  DEAELTVALRAALDAGYRLIDTAHLY---QNEHIIGKVL-----HEYISSGKLKREDIFV 77

Query: 293 LKMFDFSA---EKTAAGLDNTLSLLGLDYVDLIQVH--------DITFAP--------DT 415
                F+A   E     +++ L  L L+Y+DL  +H        + +FAP         T
Sbjct: 78  TSKLPFTAHAPEDVPKCVESQLKALQLEYIDLYLIHCPFPFKHQEGSFAPLMENGELAVT 137

Query: 416 SVVLKETLPVLEQAVRDGKARFIGIADYDIDLMKEVVEESGSQDIN 553
            +   +T   LE+  ++GK + +G++++  + ++ + + +  +  N
Sbjct: 138 EIAHIDTWRALEKLYKEGKLKALGVSNFSCNQLQALYDAAEVKPAN 183


>Z81088-3|CAB03128.1|  283|Caenorhabditis elegans Hypothetical
           protein F53F1.3 protein.
          Length = 283

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
 Frame = +2

Query: 128 LELIKESLNLGINYLETGPWYGQGSSEKVIGKAL-VGVPRDSYYIGSKVGRYDKD-TLKM 301
           L ++  +L  G    +T   Y   ++EK IG AL + +P+ +      + R D   T KM
Sbjct: 27  LPVLDAALTAGYRLFDTAKVY---NNEKEIGDALEILLPKHN------LKREDIFITTKM 77

Query: 302 FDFSAEKTAAGLDNTLSLLGLDYVDLIQVH-DITFAPDTSVVLKETLPV-----LEQAVR 463
              + E     +D +LSLL   Y+D+  +H   +F       + +TL +     L +   
Sbjct: 78  HPNTVENVKKLVDESLSLLKTSYIDMYLIHYPKSFDYGDQDPMNKTLRIATWNDLWECKN 137

Query: 464 DGKARFIGIADYDIDLMKEV 523
            GK R +G++ ++I  ++E+
Sbjct: 138 AGKIRSVGVSSFEIRHLEEL 157


>Z81088-2|CAB03127.1|  297|Caenorhabditis elegans Hypothetical
           protein F53F1.2 protein.
          Length = 297

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
 Frame = +2

Query: 137 IKESLNLGINYLETGPWYGQGSSEKVIGKALV------GVPRDSYYIGSKVGRYDKDTLK 298
           I  +L  G    +T  +Y    +EK +G+AL       G+ R   ++ SK     K+   
Sbjct: 40  IDAALTAGYRMFDTAKYY---LNEKELGEALKILLPKHGLSRSDVFLTSKFFPESKNC-- 94

Query: 299 MFDFSAEKTAAGLDNTLSLLGLDYVDLIQVH------DITFAPDTSVVLKETLPVLEQAV 460
                 E     ++ +L  L  DY+D+  VH            + +   K    VLE+A 
Sbjct: 95  -----REACRGFVEESLQSLQTDYIDMYLVHYPKPNDSDNDDVNNAEYRKIAYEVLEEAK 149

Query: 461 RDGKARFIGIADYDIDLMKEV 523
             GK R IG+++Y+I  ++E+
Sbjct: 150 AAGKVRSIGVSNYEIVHLEEL 170


>U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical
           protein EEED8.16 protein.
          Length = 590

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 142 FNELQASFLVIFPIDIAESGTSNTNVRNFDTGCTEL 35
           FN+L++    +F +D  E  TSN    + DT  TEL
Sbjct: 222 FNDLESYCCTLFFVDRIECTTSNDLFSSDDTSLTEL 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,417,177
Number of Sequences: 27780
Number of extensions: 307366
Number of successful extensions: 833
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)