Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1087
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 87 9e-18
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 69 2e-12
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 65 5e-11
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 62 5e-10
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 54 7e-08
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 87.4 bits (207), Expect = 9e-18
Identities = 41/103 (39%), Positives = 61/103 (59%)
Frame = +2
Query: 233 LXVEAIGENXGVXHXLFXQLDGVTPSHTIFASNTSSLSINEIASVVKRXDKXGGLHFFNP 412
L +EAI E+ + LF +LD +T I ASNTSS+SI +AS R + G+HFFNP
Sbjct: 92 LVIEAIVESEDIKKKLFVELDKITKPSAILASNTSSISITRLASATNRPCQVIGMHFFNP 151
Query: 413 VPXMRXLXVVKGXXTSXATYQTMMEWGKSVGKTCITCKDTPGF 541
P M+ + +++G TS + + + + +GKT I +D PGF
Sbjct: 152 PPIMKLIEIIRGADTSEEVFTKVKSFSERLGKTVICSQDYPGF 194
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 69.3 bits (162), Expect = 2e-12
Identities = 34/103 (33%), Positives = 54/103 (52%)
Frame = +2
Query: 233 LXVEAIGENXGVXHXLFXQLDGVTPSHTIFASNTSSLSINEIASVVKRXDKXGGLHFFNP 412
L +EA+ EN + +F L+ PSH + A+NTS++ +N I + D+ G HFF+P
Sbjct: 396 LVIEAVIENVKLKQQIFSDLEKYCPSHCVLATNTSTIDLNLIGEKTRSKDRIVGAHFFSP 455
Query: 413 VPXMRXLXVVKGXXTSXATYQTMMEWGKSVGKTCITCKDTPGF 541
M L +V+ TS +++ GK + KT I + GF
Sbjct: 456 AHVMPLLEIVRTQHTSPQVVVDLLDVGKKIKKTPIVVGNCTGF 498
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 64.9 bits (151), Expect = 5e-11
Identities = 31/99 (31%), Positives = 50/99 (50%)
Frame = +2
Query: 245 AIGENXGVXHXLFXQLDGVTPSHTIFASNTSSLSINEIASVVKRXDKXGGLHFFNPVPXM 424
A+ EN V +F L+ PSH + A+NTS++ ++ I D+ G HFF+P M
Sbjct: 415 AVVENVKVKQQVFADLERYCPSHCVLATNTSTIDLDLIGEKTNSQDRIAGAHFFSPAHVM 474
Query: 425 RXLXVVKGXXTSXATYQTMMEWGKSVGKTCITCKDTPGF 541
L +V+ TS +++ GK + KT + + GF
Sbjct: 475 PLLEIVRSNHTSPQVVVDLLDVGKKIKKTPVVVGNCTGF 513
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/117 (28%), Positives = 53/117 (45%)
Frame = +2
Query: 233 LXVEAIGENXGVXHXLFXQLDGVTPSHTIFASNTSSLSINEIASVVKRXDKXGGLHFFNP 412
+ +EA+ E + +F L+ V P H I A+NTS++ +N + D+ G HFF+P
Sbjct: 391 MVIEAVIEKIPLKQSIFSDLEKVCPPHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSP 450
Query: 413 VPXMRXLXVVKGXXTSXATYQTMMEWGKSVGKTCITCKDTPGFXCXXTVXALHX*SH 583
M L +V+ TS ++ GK + K + + GF T SH
Sbjct: 451 AHIMPLLEIVRTEKTSPQAILDLITVGKMIKKVPVVVGNCTGFAVNRTFFPYTQGSH 507
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 54.4 bits (125), Expect = 7e-08
Identities = 28/101 (27%), Positives = 49/101 (48%)
Frame = +2
Query: 239 VEAIGENXGVXHXLFXQLDGVTPSHTIFASNTSSLSINEIASVVKRXDKXGGLHFFNPVP 418
+EA+ E+ + +F L+ S+ I A+NTS++ ++ I D+ G HFF+P
Sbjct: 395 IEAVIEDLSLKQKIFADLEKYCHSNCILATNTSTIDLHLIGQKTSCQDRIAGAHFFSPAH 454
Query: 419 XMRXLXVVKGXXTSXATYQTMMEWGKSVGKTCITCKDTPGF 541
M L +++ TS ++ K + KT I + GF
Sbjct: 455 AMPLLEIIRTHRTSSQVVIDLLNVAKQIRKTPIVVGNCTGF 495
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,469,754
Number of Sequences: 37544
Number of extensions: 160842
Number of successful extensions: 214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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