Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1086
         (400 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.21 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.21 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.21 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.21 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.21 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.21 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.21 
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   1.9  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   1.9  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   3.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   4.5  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   5.9  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    21   5.9  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   5.9  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    20   7.8  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 185 MDKSRLRQSTVHSNEIGERQRSQRTGYES 271
           M +  L QSTV++N   +RQR+  T Y++
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQT 232


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 185 MDKSRLRQSTVHSNEIGERQRSQRTGYES 271
           M +  L QSTV++N   +RQR+  T Y++
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQT 232


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 185 MDKSRLRQSTVHSNEIGERQRSQRTGYES 271
           M +  L QSTV++N   +RQR+  T Y++
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQT 232


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 185 MDKSRLRQSTVHSNEIGERQRSQRTGYES 271
           M +  L QSTV++N   +RQR+  T Y++
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQT 232


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 185 MDKSRLRQSTVHSNEIGERQRSQRTGYES 271
           M +  L QSTV++N   +RQR+  T Y++
Sbjct: 160 MKRVHLGQSTVNANGETKRQRTSYTRYQT 188


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 185 MDKSRLRQSTVHSNEIGERQRSQRTGYES 271
           M +  L QSTV++N   +RQR+  T Y++
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQT 232


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 185 MDKSRLRQSTVHSNEIGERQRSQRTGYES 271
           M +  L QSTV++N   +RQR+  T Y++
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTSYTRYQT 232


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 176 SDCMDKSRLRQSTVHSNEIGERQRSQRTGYES 271
           SDC       Q+  H+NE+  R + +   YES
Sbjct: 27  SDCDKNQNTEQNYTHNNEMYHRVKEEPI-YES 57


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 176 SDCMDKSRLRQSTVHSNEIGERQRSQRTGYES 271
           SDC       Q+  H+NE+  R + +   YES
Sbjct: 27  SDCDKNQNTEQNYTHNNEMYHRVKEEPI-YES 57


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 185 MDKSRLRQSTVHSNEIGERQRSQ 253
           M +  L QSTV++N   +RQR++
Sbjct: 204 MKRVHLGQSTVNANGETKRQRTR 226


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 338 HRPCTQRRRHPLADPRSDQ 282
           H P T     PL  P+S++
Sbjct: 103 HNPLTPPNSEPLVSPKSEK 121


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -1

Query: 376 HQRRILVLPAGPRTAPAHSGGGTPSRTLARTSS 278
           H++  +   + PR++PA +      +++A T+S
Sbjct: 143 HKKEQMNKVSTPRSSPAETASSLSPQSVASTAS 175


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 60  SNYQNARIVVFRRTDVY 10
           S+Y+  R +  R TDVY
Sbjct: 114 SSYEITRFIRSRETDVY 130


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -1

Query: 376 HQRRILVLPAGPRTAPAHSGGGTPSRTLARTSS 278
           H++  +   + PR++PA +      +++A T+S
Sbjct: 134 HKKEQMNKVSTPRSSPAETASSLSPQSVASTAS 166


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 377 ASKAHTGPAG 348
           A  AHTGP G
Sbjct: 49  AGNAHTGPTG 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,673
Number of Sequences: 336
Number of extensions: 2098
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)