Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1086
(400 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 26 2.5
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 3.3
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 25 4.3
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p... 25 4.3
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 4.3
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 5.7
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 5.7
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 24 7.6
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 24 10.0
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.8 bits (54), Expect = 2.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 166 QAKTFPLNISN*VQIQTPPHSVRDS 92
Q +FPL N Q + P HS+RD+
Sbjct: 501 QPHSFPLRKQNVAQSEFPKHSLRDN 525
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 3.3
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = -1
Query: 352 PAGPRTAPAHSGGGTPSRTLARTSSPGALISG-ALTSLTLPNLVGMNGRLAQSAFIHTVT 176
P+ +T P S T S++L TSSP + S + TS ++ + N + S+ + +
Sbjct: 643 PSSSQTTPTSSSSITGSQSLKETSSPAYVSSTVSYTSSSVDSSSTYNSTGSSSSDSQSFS 702
Query: 175 KTIQAKTFPLNISN*VQIQTPPHSVRDSLN 86
T + S I + P S++ S++
Sbjct: 703 GTTYSDPTTTITSEVSSILSSPTSMQSSVS 732
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.0 bits (52), Expect = 4.3
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = -1
Query: 334 APAHSGGGTPSRTLARTSSPGALISGALTSLTLPNLVGMNGRLAQSAFIHTVTKTIQAK 158
AP+ SG T R ++ GA+ +G S +L Q T T ++ K
Sbjct: 150 APSRSGASTAGRRRTSATTRGAIQNGVYHSPYTASLADSGSTRGQKVSNATATTQLETK 208
>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 4.3
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +3
Query: 78 YFVLRLSRTLCGGVCIWTQLE---MLSGKVFACIVLVTVWIKADCASLPFIPTRLGSVKE 248
Y+ LRL R G ++ L+ S K+F C V+ T W+ + LP R S +
Sbjct: 264 YWQLRLER---GYTQVYADLQNRLCTSSKLFGCPVVCTNWLLNNKQHLPIQCKRFRSERR 320
Query: 249 VSA 257
+A
Sbjct: 321 ANA 323
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.0 bits (52), Expect = 4.3
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 201 SRLLSIQSLKLYKQKPFRLTFPTESKYRHHR--TAYEIVLIRNTNVARLSNYQNARIVVF 28
S + +Q+ K KP L TES+ + +R E++ ++ + ARL + + ++
Sbjct: 1125 SAIAELQAKSSIKSKPLTLKTATESEIKGYRDQIQLEVLNLKPDSEARLQAIERSELLQK 1184
Query: 27 RR 22
+R
Sbjct: 1185 KR 1186
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 5.7
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -3
Query: 278 TRGSHIRCADFFDAPQSRWNER*TGAVGFYPYSH*NYTSKNLS 150
T S + ++ FD+ + +N TG Y + +YT+ N S
Sbjct: 316 TPSSAVTLSNGFDSQSNAYNNSGTGPPMLYKFPQRSYTAPNTS 358
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 24.6 bits (51), Expect = 5.7
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = -3
Query: 281 LTRGSHIRCADFFDAPQSRWNE----R*TGAVGFYPYSH*NYTSKNLSA*HFQLSPNTDT 114
L R S I CA +F +SR+NE R T V FY + TS+N H+ T+
Sbjct: 3 LGRSSWICCAKYFVNTKSRFNEILPPRFTLIVSFYSMN----TSENDPDGHYDFPEMTEH 58
Query: 113 TAQR 102
+ R
Sbjct: 59 HSDR 62
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 24.2 bits (50), Expect = 7.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 80 FRIKTISYAVRWCLYLDSV 136
F I +++ A RWC +LD++
Sbjct: 351 FYIPSLNPAPRWCSFLDNI 369
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 56 LDKRATFVFRIKTISYAVRWCLYLDSVGNVK 148
L+ FVF + T+ Y C YLD +K
Sbjct: 2492 LENITGFVFTVPTMEYRNEVCSYLDLAMKLK 2522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,190
Number of Sequences: 5004
Number of extensions: 32403
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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