Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1086
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496 32 0.15
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 32 0.15
03_06_0613 - 35090377-35090478,35090686-35090839,35090925-350910... 30 0.59
06_01_0897 - 6903294-6903401,6903781-6903855,6904239-6904379,690... 29 1.0
03_05_0819 + 27948797-27948956,27948976-27949202 29 1.8
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 28 2.4
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 28 3.1
01_05_0503 - 22779025-22779397,22779602-22779627 28 3.1
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565... 27 4.1
09_03_0175 - 13110771-13112240 27 5.5
07_03_1153 + 24398122-24398747,24399326-24399542,24399741-244002... 27 5.5
07_03_0692 + 20731926-20731982,20732199-20732345,20732376-207324... 27 5.5
08_01_0970 - 9778183-9778488,9780052-9780567 27 7.2
07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451 27 7.2
11_06_0701 + 26407055-26407597,26407794-26409644 26 9.5
09_02_0206 - 5783868-5783986,5784422-5784485,5784552-5784620,578... 26 9.5
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 26 9.5
02_05_0868 + 32342967-32343915,32344389-32344447 26 9.5
02_01_0157 - 1090653-1090886,1091205-1091361,1091538-1091638,109... 26 9.5
01_06_1802 + 39978634-39978880,39979016-39979431 26 9.5
>10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496
Length = 389
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 349 AGPRTAPAHSGGGTPSRTLARTSSPGALISGALTSLTLP 233
A P A G GTP+ T+ PGA + G T+ T+P
Sbjct: 276 ATPTPAAMMPGTGTPTTPTTATAMPGATMPGTATATTMP 314
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 32.3 bits (70), Expect = 0.15
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 361 LVLPAGPRTAP-AHSGGGTPSRTLARTSSPGALISGALTSL 242
+ LP PR AP +H GG R L + P L+S A++SL
Sbjct: 279 VALPVRPRNAPRSHRGGAYSVRLLYTSGMPVVLLSSAVSSL 319
>03_06_0613 -
35090377-35090478,35090686-35090839,35090925-35091004,
35091191-35091340,35091920-35092045,35096500-35096916
Length = 342
Score = 30.3 bits (65), Expect = 0.59
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 352 PAGPRTAPAHSGGGTPSRTLARTSSPGALISGALTSLTLPNLV 224
P P+ P H GGG + + +SSP + A T L P L+
Sbjct: 21 PGVPKQQPHHGGGGAAVGSSSASSSPAPAPAAASTLLLPPRLL 63
>06_01_0897 -
6903294-6903401,6903781-6903855,6904239-6904379,
6904496-6904646,6905035-6905178,6905276-6905366,
6906071-6906308
Length = 315
Score = 29.5 bits (63), Expect = 1.0
Identities = 27/86 (31%), Positives = 39/86 (45%)
Frame = -1
Query: 397 MSSPFRXHQRRILVLPAGPRTAPAHSGGGTPSRTLARTSSPGALISGALTSLTLPNLVGM 218
+++ FR RR+L+LPA +AP + L +S L A SLT+P+
Sbjct: 26 LATTFRRGGRRLLLLPATRGSAPRRAA------LLTARASAEPLEVCAKASLTVPD---- 75
Query: 217 NGRLAQSAFIHTVTKTIQAKTFPLNI 140
RL F V TI+ K P +I
Sbjct: 76 --RLGDCPFTQRVLLTIEEKHLPYDI 99
>03_05_0819 + 27948797-27948956,27948976-27949202
Length = 128
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Frame = -1
Query: 364 ILVLPAGPR--TAPAHSGGGTPSRT--LARTSSPGALISGA 254
+ +LP+ P + A GGG+PSRT LART++P A S +
Sbjct: 4 LCLLPSTPPCCSCGAAGGGGSPSRTPRLARTAAPFASSSSS 44
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -1
Query: 340 RTAPAHSGGGTPSRTLARTSSPGALISGALTSLTLPNLVGMNGR 209
RT A SGG TP+ + R S A ++G P G GR
Sbjct: 16 RTRSASSGGETPTESSGRRRSKQAAVTGERGGRRRPAAGGEGGR 59
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 352 PAGPRTAPAHSGGGTPSRTLARTSSPG 272
P P TA GG+P RT+ S+PG
Sbjct: 110 PRAPATAATVPQGGSPRRTVPAQSAPG 136
>01_05_0503 - 22779025-22779397,22779602-22779627
Length = 132
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 171 LYKQKPFRLTFPTESKYRHHRTAYEIVLIRNTNVARLSN 55
LYK + ++L + E+K+R+ TA IR + LSN
Sbjct: 42 LYKSQEYKLHYTLETKHRNRNTANSKDGIRMAAMENLSN 80
>11_01_0687 -
5651002-5651453,5651535-5651951,5652621-5653338,
5654106-5654417,5654482-5654814
Length = 743
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 306 GVPPPLCAGAVRGPAGRTSMR 368
GVPPP C+G G G S R
Sbjct: 440 GVPPPTCSGGHTGFGGNNSAR 460
>09_03_0175 - 13110771-13112240
Length = 489
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +3
Query: 201 CASLPFIPTRLGSVKEVSAPDMRAPGELVRARVREG--VPPPLCAGAVR 341
CA L F+P +GS + P+ + R G VP P A A R
Sbjct: 21 CAELAFLPPGMGSASDAVIPNAALKAAIGTWCARSGRVVPAPPSADAAR 69
>07_03_1153 +
24398122-24398747,24399326-24399542,24399741-24400220,
24400801-24401007,24401112-24401249,24401317-24401538
Length = 629
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -1
Query: 391 SPFRXHQRRILVLPAGPRTA---PAHSGGGTPSRTLARTSSPGA 269
SPF R A P ++ PA GGG +R A ++SPGA
Sbjct: 63 SPFYGENWRNPAAAANPSSSSLLPAVVGGGAHARAAAYSASPGA 106
>07_03_0692 +
20731926-20731982,20732199-20732345,20732376-20732434,
20732556-20732805
Length = 170
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 367 RILVLPAGPRTAPAHSGGGTPSRTLARTSSPGALISGALT 248
R+LV+ G A SGGG PS T A G ++ A+T
Sbjct: 4 RVLVVAEG-----ADSGGGAPSMTTAAKVLDGGVLGAAVT 38
>08_01_0970 - 9778183-9778488,9780052-9780567
Length = 273
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 358 VLPAGPRTAPAHSGGGTPSRTLARTSSPGALISGALTSLTLPNLVG 221
VL AG H GGG + +P + GA+ +++L L G
Sbjct: 24 VLAAGIYYGAPHRGGGGVTECERFLRAPALALGGAIVAVSLAGLAG 69
>07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451
Length = 511
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +3
Query: 273 PGELVRARVREGVPPPLCAGAVRGPAG 353
P E RAR R VPPP AG RG G
Sbjct: 30 PREPRRARSRSHVPPPPGAGDGRGGDG 56
>11_06_0701 + 26407055-26407597,26407794-26409644
Length = 797
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 145 NISN*VQIQTPPHSVRDSLNTKYERCSF 62
N+ N ++ TPPH++RD + + C F
Sbjct: 603 NVENIFEMLTPPHNLRDLVIGYFFGCRF 630
>09_02_0206 -
5783868-5783986,5784422-5784485,5784552-5784620,
5784698-5784940,5786844-5786912,5786988-5787212,
5787289-5787532,5787607-5787716,5787948-5788016,
5788988-5789042,5789063-5789097,5789422-5789514,
5789545-5789595
Length = 481
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 368 AHTGPAGGATHRPCTQRRRHPLADPRSDQL 279
A PAGG R T RHP A S+ L
Sbjct: 25 ARASPAGGRRSRWTTAAARHPTAAVNSENL 54
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 350 GGATHRPCTQRRRHPLADPRSDQLTRGSHIRCA 252
G H T+R PLA+ R + RG+H C+
Sbjct: 15 GDLRHLAATKRTHRPLAEFRRLRPGRGTHAACS 47
>02_05_0868 + 32342967-32343915,32344389-32344447
Length = 335
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -3
Query: 389 AVPXASKAHTGPAGGATHRPCTQRRRHPLADPRSDQLTRGSHIRCADFFDAP 234
AVP + GPA + P RRR P P + + + I ++F+ P
Sbjct: 104 AVPGRAFRQPGPAPAPSPAPAPPRRRMPSPPPVARRPSTPPAIDPGNYFNGP 155
>02_01_0157 -
1090653-1090886,1091205-1091361,1091538-1091638,
1091786-1091900,1092940-1093003,1093107-1093209,
1093331-1093432,1093542-1093617,1093672-1093790,
1093918-1094100,1094378-1094499,1095605-1095944
Length = 571
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -1
Query: 382 RXHQRRILVLPAGPRTAPAHSGGGTPSRTLARTSSPGAL-ISGALTSL 242
R H RR L + A + + G G P R S G L + GA T+L
Sbjct: 20 RPHLRRTLSVRASASASASPDGAGGPVRVRFAPSPTGNLHVGGARTAL 67
>01_06_1802 + 39978634-39978880,39979016-39979431
Length = 220
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +3
Query: 243 KEVSAPDMRAPGELVRARVREGVPPPLCAGAVRGPAGRTSMRL*CXR 383
+E AP A + R G PP + GP GRT C R
Sbjct: 98 REPPAPQQPAAVVVERVFYMVGSPPDVITATGEGPGGRTVAGFRCRR 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,910,767
Number of Sequences: 37544
Number of extensions: 244353
Number of successful extensions: 916
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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