Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1086
(400 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_40786| Best HMM Match : WSC (HMM E-Value=0.44) 29 1.8
SB_59081| Best HMM Match : TSP_1 (HMM E-Value=2.5) 28 2.4
SB_55018| Best HMM Match : AT_hook (HMM E-Value=2.9) 28 3.2
SB_11886| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94) 27 7.4
SB_41245| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 26 9.8
SB_28864| Best HMM Match : Trypsin (HMM E-Value=1.4e-40) 26 9.8
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) 26 9.8
SB_12346| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 397 MSSPFRXHQRRILVLPAGPRT---APAHSGGGTPSRTLARTSSPGA 269
++SPFR + ++ + P T GG P +TL++ +SPGA
Sbjct: 273 LTSPFRSYIMSERLMESDPSTWGDMSTFENGGIPVKTLSKLTSPGA 318
>SB_40786| Best HMM Match : WSC (HMM E-Value=0.44)
Length = 230
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 340 RTAPAHSGGGTPSRTLARTSSPGALISGAL 251
R +P+ +G GTP+R T SP ++SG L
Sbjct: 142 RPSPSPTGTGTPTRKPEPTLSPTRMLSGLL 171
>SB_59081| Best HMM Match : TSP_1 (HMM E-Value=2.5)
Length = 122
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -3
Query: 341 THRPCTQRRRHPLADPRSDQLTRGSHIRC--ADFFDAPQSR 225
T +PCT++ +HP + TR H A+ AP +R
Sbjct: 49 TRKPCTKKHKHPKPTQHTTPCTRHKHTSAITAELKPAPTTR 89
>SB_55018| Best HMM Match : AT_hook (HMM E-Value=2.9)
Length = 130
Score = 27.9 bits (59), Expect = 3.2
Identities = 22/88 (25%), Positives = 40/88 (45%)
Frame = -1
Query: 343 PRTAPAHSGGGTPSRTLARTSSPGALISGALTSLTLPNLVGMNGRLAQSAFIHTVTKTIQ 164
P T+ S G+P+R AR + G + + L LP+ V N + ++ + + +
Sbjct: 21 PGTSDDSSNNGSPARKRARPNKYGGMSEEDVMKLLLPDRVAENLDILFVVYV-MPSSSGR 79
Query: 163 AKTFPLNISN*VQIQTPPHSVRDSLNTK 80
T+P S+ ++ T S+RD K
Sbjct: 80 TMTYP-RASDKLKFFTELKSLRDEAKLK 106
>SB_11886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 273 PGELVRARVREGVPPPLCAGAVRG 344
P L RAR+R V LCAG V G
Sbjct: 39 PAPLWRARIRRTVTDRLCAGPVSG 62
>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
Length = 450
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 87 LRLSRTLCGGVCIWTQLEMLSGKVFACIVLVTVWIKADCASLPFI 221
+R+SRT+ T + M F LV W+ DC L F+
Sbjct: 40 VRISRTISQ-----TYVHMFESGYFRLAFLVLAWVNIDCCPLTFL 79
>SB_41245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = +3
Query: 117 VCIWTQ---LEMLSGKVFA--CIVLVTVWIKADCASLPFIP 224
VC+W Q + M++ VF C V +W++ C ++ +P
Sbjct: 177 VCLWVQYLYMSMVAVPVFVYGCSTCVRLWVQYMCLTMGAVP 217
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 156 PFRLTFPTESKYRHHRTAYEIVLIR 82
PF +T P+ES RH A +VL R
Sbjct: 773 PFTVTVPSESTCRHASLALAVVLQR 797
>SB_28864| Best HMM Match : Trypsin (HMM E-Value=1.4e-40)
Length = 230
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = -2
Query: 213 VDWRSRLLSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIVLIRNTNVARLSNY 52
VDW + ++S+ L+ + + RH Y++ L+R A+ +NY
Sbjct: 41 VDWFEQSRRVRSIHLHPRYQEATITVEGHRARHVPPDYDVALLRLATPAKFTNY 94
>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
Length = 1023
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +3
Query: 228 RLGSVKEVSAPDMRAPGELVRARVREGVPPPLCAGAVRGPAGR 356
RLG V E S +MR P R + PP + A GR
Sbjct: 284 RLGRVSEESGDEMRVPRGGASRGARRALSPPAGSAAAIAIPGR 326
>SB_12346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 26.2 bits (55), Expect = 9.8
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = -2
Query: 231 ISLE*TVDWRSRLLSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIVLIRNTNVARLSNY 52
+S +V + SRLLS+ S+ L +QK ++ E+ R + N N+ R++++
Sbjct: 86 LSFPRSVVFVSRLLSVSSITLTRQKEKKVAQDIEAWGRDLAPYGAHSRVLNRNICRVNHH 145
Query: 51 QN 46
Q+
Sbjct: 146 QS 147
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,419,304
Number of Sequences: 59808
Number of extensions: 263537
Number of successful extensions: 757
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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