Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1086
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   0.97 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   2.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   9.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 337 TAPAHSGGGTPSRTLARTSSPGALISG-ALTSLTLPNLVGMN 215
           T+P++ GGG+ S +    SSP +  S  + TSL   N  G++
Sbjct: 79  TSPSYPGGGSSSPS---PSSPSSFFSSVSPTSLGSENYTGIS 117


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -1

Query: 340 RTAPAHSGGGTPS---RTLARTSSPGA 269
           R  P H+  G PS    T+A TS+PG+
Sbjct: 212 RHLPGHAQMGRPSYTTATMATTSTPGS 238


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 352 PAGPRTAPAHSGGGTPSRTLARTSS 278
           P+   ++P HSG    +   ART+S
Sbjct: 62  PSPTGSSPQHSGSSASTSPAARTTS 86


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +3

Query: 168 IVLVT-VWIKADCASLP 215
           IV V+ VW+ A C SLP
Sbjct: 159 IVYVSLVWLGAACISLP 175


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = -1

Query: 250 TSLTLPNLVGMNGRLAQSAFIHTVTKTIQAKTFPLNISN 134
           TSLT P  +   GR     ++     ++Q     + +SN
Sbjct: 200 TSLTEPYTLRNYGRRINCTYVALYPSSVQVIALGVGVSN 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,453
Number of Sequences: 438
Number of extensions: 2632
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)