Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1085
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 244 8e-66
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 139 3e-34
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 133 2e-32
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 126 4e-30
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 112 4e-26
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 97 2e-21
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 88 1e-18
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 77 4e-15
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 50 3e-07
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 29 0.54
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 6.6
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 6.6
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 8.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 8.7
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 8.7
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 244 bits (598), Expect = 8e-66
Identities = 136/248 (54%), Positives = 163/248 (65%)
Frame = +1
Query: 1 LNPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVT 180
LNP +I R+SSF+GAIA+GDLVKSTLGPKGMDKIL S +SG + VT
Sbjct: 3 LNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQS--NSSGDIVVT 60
Query: 181 NDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQ 360
NDGATILKSI +DN AAK+LV++SKVQD+EVGDGTTSV V ++ K+HPQ
Sbjct: 61 NDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQ 120
Query: 361 TIIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKL 540
II G+RIA+ A AL +S D+ + A R DLENIARTTLSSKILS +K HF +L
Sbjct: 121 VIIDGYRIATKTAIDALRASSIDNSS--DPAKFRSDLENIARTTLSSKILSQNKNHFAQL 178
Query: 541 AVDAVLRLKGSGNLKAIQIIKISGGLLEESFLDEXVLAKQKSWCTSTKEXXKC*HPYCKH 720
AVDAVLRLKGS NL IQIIKI GG L++SFLDE + + K
Sbjct: 179 AVDAVLRLKGSTNLDNIQIIKILGGKLDDSFLDEGFILNKTIGVNCPKVMENANILIANT 238
Query: 721 TMDTDRLK 744
MDTD++K
Sbjct: 239 AMDTDKVK 246
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 139 bits (337), Expect = 3e-34
Identities = 80/200 (40%), Positives = 123/200 (61%), Gaps = 7/200 (3%)
Frame = +1
Query: 58 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 237
R + + AI ++VKS+LGP G+DK+LV + G V VTNDGATIL + V++PA K+
Sbjct: 23 RNQNVLATTAIANVVKSSLGPVGLDKMLVD---DIGDVTVTNDGATILSLLDVEHPAGKV 79
Query: 238 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 417
LV++++ QD+EVGDGTTSV + +L++ K+HP TII G+R+A A + + +
Sbjct: 80 LVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTD 139
Query: 418 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGN------ 579
+L + S L N+A+T++SSKI+ N + F+ +AVDA+L +K S +
Sbjct: 140 VLSCSVDSLGKES----LINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRY 195
Query: 580 -LKAIQIIKISGGLLEESFL 636
+KA+ I+K G ES L
Sbjct: 196 PVKAVNILKAHGKSSRESVL 215
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 133 bits (322), Expect = 2e-32
Identities = 79/219 (36%), Positives = 120/219 (54%), Gaps = 1/219 (0%)
Frame = +1
Query: 7 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 186
P+ +LK +S+ +A+ D +++TLGP G DK++V + G+V ++ND
Sbjct: 9 PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVD---DRGEVVISND 65
Query: 187 GATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTI 366
GATI+K + + +PAAK LVD+++ QD EVGDGTTSV V +E + I
Sbjct: 66 GATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLI 125
Query: 367 IAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAV 546
I G+R A+ A + E + H +E LR L A T ++SK++ ++ FTK+ V
Sbjct: 126 IRGYRKAAQLAVNKIKEIAI-HLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVV 184
Query: 547 DAVLRLKGSG-NLKAIQIIKISGGLLEESFLDEXVLAKQ 660
DAVL L N I I K+ GG +E+S L + V K+
Sbjct: 185 DAVLTLDQEDLNENMIGIKKVPGGAMEDSLLVKGVAFKK 223
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 126 bits (303), Expect = 4e-30
Identities = 75/198 (37%), Positives = 121/198 (61%), Gaps = 5/198 (2%)
Frame = +1
Query: 58 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 237
R+S+ + A ++ D ++++LGPKGMDK ++ G+ G+V +TNDGATILK + V +PAAK+
Sbjct: 21 RLSNIMAARSVADAIRTSLGPKGMDK-MIQTGK--GEVILTNDGATILKHLSVLHPAAKM 77
Query: 238 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 417
LVD+S QD E GDGTTSV + KL+++ +HP I ++ A+ + E
Sbjct: 78 LVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKE 137
Query: 418 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVL-----RLKGSGNL 582
+ + + E+ LR A T+L+SKI+S + +AVDAVL R+ + +L
Sbjct: 138 NALAIELSDRESLLRA-----ATTSLNSKIVSQYSNLLAPIAVDAVLKVIDPRVATNVDL 192
Query: 583 KAIQIIKISGGLLEESFL 636
K I+I+K GG+++++ L
Sbjct: 193 KDIRIVKKLGGIIDDTEL 210
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 112 bits (270), Expect = 4e-26
Identities = 68/184 (36%), Positives = 105/184 (57%), Gaps = 1/184 (0%)
Frame = +1
Query: 64 SSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILV 243
S + + ++V+++LGP+G+DKIL+S G++ VTNDGATIL + V++ AK+LV
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILIS---PDGEITVTNDGATILDQMEVEHQIAKLLV 94
Query: 244 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEAS 423
+SK QD+E+GDGTT V V LI++ +HP I G+ A A + L +A
Sbjct: 95 QLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHL-DAI 153
Query: 424 FDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKA-IQII 600
D E + +L A+T+L SK++S +HF +AVDAVL + ++I
Sbjct: 154 SDVVDFSPENT--TNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSVADLQRKDVDFELI 211
Query: 601 KISG 612
K+ G
Sbjct: 212 KVDG 215
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 97.1 bits (231), Expect = 2e-21
Identities = 64/226 (28%), Positives = 119/226 (52%), Gaps = 8/226 (3%)
Frame = +1
Query: 4 NPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTN 183
+P+ ++ +MS+ A A+ D++++ LGP+ M K+L+ G V +TN
Sbjct: 3 SPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLD---PVGSVLLTN 59
Query: 184 DGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQT 363
DG IL+ I V +PAAK ++++++ QDEEVGDGTTSV + L+++K+HP
Sbjct: 60 DGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVV 119
Query: 364 IIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLA 543
+I ++ A + A + E + N+++ ++ + RT + +K+++ + LA
Sbjct: 120 MIRSFKQALEDALSIIDEITL--PVNVDD---NAEMFRLIRTCIGTKLVARWSDLMCHLA 174
Query: 544 VDAVLRLKGSGN-------LKAIQIIKISGGLLEES-FLDEXVLAK 657
+ AV + + N + ++ K+ GG +E S LD +L K
Sbjct: 175 LRAVRTVASTSNGRMEIDIKRYARVEKVPGGEIESSCVLDGVMLNK 220
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 88.2 bits (209), Expect = 1e-18
Identities = 54/163 (33%), Positives = 82/163 (50%)
Frame = +1
Query: 79 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKV 258
AI + D++KS LGP G K+LV +G +++T DG +L + + NP A + +
Sbjct: 25 AIGLQDVLKSNLGPTGTTKMLVD---GAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATA 81
Query: 259 QDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQK 438
QD+ GDGTTSV + I + LHP I G+ +A + A L D +
Sbjct: 82 QDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFEV 141
Query: 439 NLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLK 567
+ R L N+A+T+LS+KI S E VDA+L ++
Sbjct: 142 D------REVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIR 178
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 76.6 bits (180), Expect = 4e-15
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 4/185 (2%)
Frame = +1
Query: 88 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDE 267
+ ++ +++LGP G +KI+V+ + Q +TND ATI++ + V +PAAK++VD ++ Q+
Sbjct: 38 LSEITRTSLGPNGKNKIVVN---HLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQEN 94
Query: 268 EVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKNLN 447
E+GD V V +I L P I G+ +A + L E D +
Sbjct: 95 ELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICAD---KIE 151
Query: 448 EASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRL----KGSGNLKAIQIIKISGG 615
+L RT +SSK N ++ + L A+L + N+ I+++KI G
Sbjct: 152 TVESEKELIKAIRTCISSKQYGN-EDFLSDLVAKAILTVLPKDPSKFNVDNIRVVKIMGS 210
Query: 616 LLEES 630
L S
Sbjct: 211 SLYNS 215
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 50.4 bits (115), Expect = 3e-07
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Frame = +1
Query: 58 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGV----DNP 225
R S G + V TLGPKG + ++ + G ++T DG T+ +S+ + +N
Sbjct: 44 RASLLTGVDTLARAVSVTLGPKGRNVLI---DQPFGSPKITKDGVTVARSVSLKDKFENL 100
Query: 226 AAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 393
A+++ D++ +E GDGTT+ TV + + +P + G ++A D
Sbjct: 101 GARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVD 156
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 29.5 bits (63), Expect = 0.54
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 457 LRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 603
L V E++ LS LS +K T ++ +LR GS LKAI ++K
Sbjct: 518 LPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLK 566
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +3
Query: 486 DYTELKDPFKSQRAFHKISS*CSFAFERI 572
D +L +P+++ FH S C F F+ +
Sbjct: 107 DVAQLVEPYRNDCIFHDASGACHFFFKEV 135
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 6.6
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +1
Query: 82 IAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQ 261
IA+ D+ S LG G+ RN G + DG T LKS+GV + K+ VQ
Sbjct: 324 IAVPDV--SQLGIPGVKPEAYRDSRNFGGRDA--DGVTGLKSLGVRDLTYKLSFLACMVQ 379
Query: 262 DEEVGD 279
++ D
Sbjct: 380 PDDAND 385
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +1
Query: 88 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSI 210
+G++ LGP I+ +CG ++ V+ A + + I
Sbjct: 757 VGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQI 797
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 490 TLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 603
T +KILS+H E TK V + GS +L A + K
Sbjct: 2222 TTHAKILSSHPEWDTKAVTLTVSYIPGSISLAAYTVSK 2259
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 212 PIDFNIVAPSFVTST*PEFLPQETKILSIP 123
P+D ++ +P TST PE LP+E S+P
Sbjct: 408 PLDGDVESPH-PTSTMPEALPREPLSFSLP 436
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,694
Number of Sequences: 5004
Number of extensions: 50269
Number of successful extensions: 145
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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