Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1085
(749 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 244 7e-65
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 139 2e-33
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 132 2e-31
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 111 5e-25
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 103 1e-22
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 91 5e-19
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 91 5e-19
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 91 7e-19
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 75 5e-14
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 73 3e-13
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 50 2e-06
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 49 3e-06
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 48 5e-06
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 48 7e-06
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 48 7e-06
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 48 7e-06
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 47 1e-05
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 46 3e-05
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 45 6e-05
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 43 2e-04
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 244 bits (596), Expect = 7e-65
Identities = 133/244 (54%), Positives = 162/244 (66%)
Frame = +1
Query: 13 RILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGA 192
+I K+ RM+SF+GA+AI DLVKSTLGPKGMDKIL S GR V VTNDGA
Sbjct: 5 KIFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHA-VTVTNDGA 63
Query: 193 TILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIA 372
TILKS+ +DNPAAK+LVD+SKVQD+EVGDGTTSV V KL+ K+HP TIIA
Sbjct: 64 TILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIA 123
Query: 373 GWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDA 552
G+R+AS+ A+ AL + D++ N + R DL IA TTL SKILS KEHF ++AVDA
Sbjct: 124 GYRMASECARNALLKRVIDNKDNAEK--FRSDLLKIAMTTLCSKILSQDKEHFAEMAVDA 181
Query: 553 VLRLKGSGNLKAIQIIKISGGLLEESFLDEXVLAKQKSWCTSTKEXXKC*HPYCKHTMDT 732
V RLKGS NL+AIQIIK GG L++SFLDE + +K K MDT
Sbjct: 182 VFRLKGSTNLEAIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENANILVANTAMDT 241
Query: 733 DRLK 744
D++K
Sbjct: 242 DKVK 245
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 139 bits (336), Expect = 2e-33
Identities = 78/200 (39%), Positives = 115/200 (57%)
Frame = +1
Query: 61 MSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKIL 240
+S+ A+GD+V++TLGP+GMDK++ + G V ++NDGATI+K + + +PAAKIL
Sbjct: 26 VSNINACTAVGDVVRTTLGPRGMDKLIHD---DKGSVTISNDGATIMKLLDIVHPAAKIL 82
Query: 241 VDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEA 420
VD++K QD EVGDGTT+V + IE +H Q +I +R AS A + E
Sbjct: 83 VDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAIAKVKEL 142
Query: 421 SFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQII 600
+ + E + L A TTLSSK++ KE F + VDAV+ + L I I
Sbjct: 143 AVSIEGKSVEEKKGL-LAKCAATTLSSKLIGGEKEFFATMVVDAVMAIGNDDRLNLIGIK 201
Query: 601 KISGGLLEESFLDEXVLAKQ 660
K+ GG + +SFL + V K+
Sbjct: 202 KVPGGNMRDSFLVDGVAFKK 221
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 132 bits (320), Expect = 2e-31
Identities = 74/200 (37%), Positives = 120/200 (60%), Gaps = 7/200 (3%)
Frame = +1
Query: 58 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 237
R + + A+ ++VK++LGP G+DK+LV + G V +TNDGATIL+ + V++PAAK+
Sbjct: 21 RTQNVMACQAVSNIVKTSLGPVGLDKMLVD---DIGDVTITNDGATILRMLEVEHPAAKV 77
Query: 238 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 417
LV+++++QD EVGDGTTSV + L+ K+HP +II+G+R+A + + + E
Sbjct: 78 LVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEE 137
Query: 418 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGN------ 579
+ L +V L N A+T++SSK++S + F L V+AVL +K +
Sbjct: 138 KLVTKVEKLG----KVPLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKY 193
Query: 580 -LKAIQIIKISGGLLEESFL 636
+K I I+K G +S+L
Sbjct: 194 PIKGINILKAHGQSARDSYL 213
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 111 bits (267), Expect = 5e-25
Identities = 69/193 (35%), Positives = 108/193 (55%), Gaps = 4/193 (2%)
Frame = +1
Query: 85 AIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQD 264
A+ +++S+LGPKGMDK+L G + +TNDGATIL+ + VDN AK++V++S+ QD
Sbjct: 39 AVARILRSSLGPKGMDKMLQG---PDGDITITNDGATILEQMDVDNQIAKLMVELSRSQD 95
Query: 265 EEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKNL 444
E+GDGTT V V + +++ +HP I G+ +AS A + L + + ++
Sbjct: 96 YEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDV 155
Query: 445 NEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRL----KGSGNLKAIQIIKISG 612
N L TTLSSKI++ K ++AV AVL + + NL I++ G
Sbjct: 156 NNYE---PLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVG 212
Query: 613 GLLEESFLDEXVL 651
G LE++ L +L
Sbjct: 213 GKLEDTELIYGIL 225
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 103 bits (248), Expect = 1e-22
Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 5/196 (2%)
Frame = +1
Query: 58 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 237
R ++ A A+ D V+++LGPKGMDK++ + +G+V +TNDGATIL + V PAAK+
Sbjct: 30 RFANINSARAVSDAVRTSLGPKGMDKMISTA---NGEVIITNDGATILNKMEVLQPAAKM 86
Query: 238 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 417
LV++SK QD GDGTT+V V L+ +HP I A A L
Sbjct: 87 LVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAIDILTA 146
Query: 418 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG-----NL 582
+ E + R L A T+L+SK++S + LAVDAVL + +L
Sbjct: 147 MAVP-----VELTDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDPEKPEIVDL 201
Query: 583 KAIQIIKISGGLLEES 630
+ I+I+K GG ++++
Sbjct: 202 RDIKIVKKLGGTVDDT 217
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 91.5 bits (217), Expect = 5e-19
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 8/190 (4%)
Frame = +1
Query: 85 AIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQD 264
A+ D++++TLGP+ M K+L+ G G + VTNDG IL+ + V +PAAK ++++S+ QD
Sbjct: 30 AVADIIRTTLGPRSMLKMLLDAG---GGIVVTNDGNAILRELDVAHPAAKSMIELSRTQD 86
Query: 265 EEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKNL 444
EEVGDGTTSV V +E+ HP I + A + + L + + ++
Sbjct: 87 EEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKALEDSIAVLDKIAM--SIDI 144
Query: 445 NEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRL---KGSG-----NLKAIQII 600
N+ R + + ++ + +K S + LA+DA + G G K I++
Sbjct: 145 ND---RSQVLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVE 201
Query: 601 KISGGLLEES 630
K+ GG E+S
Sbjct: 202 KVPGGQFEDS 211
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 91.5 bits (217), Expect = 5e-19
Identities = 52/163 (31%), Positives = 89/163 (54%)
Frame = +1
Query: 79 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKV 258
A + D++KS LGPKG K+LV SG +++T DG T+LK + + NP A ++ +
Sbjct: 26 AKGLQDVLKSNLGPKGTIKMLVG---GSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVA 82
Query: 259 QDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQK 438
QD+ GDGTTS + + I++ +HP+ ++ G+ IA A Q L +F
Sbjct: 83 QDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFL--DTFKTPV 140
Query: 439 NLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLK 567
+ + + L+ +ARTTL +K+ + T + V++VL ++
Sbjct: 141 VMGDEPDKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIR 183
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 91.1 bits (216), Expect = 7e-19
Identities = 52/163 (31%), Positives = 89/163 (54%)
Frame = +1
Query: 79 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKV 258
A + D++KS LGPKG K+LV SG +++T DG T+LK + + NP A ++ +
Sbjct: 26 AKGLQDVLKSNLGPKGTIKMLVG---GSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVA 82
Query: 259 QDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQK 438
QD+ GDGTTS + + I++ +HP+ ++ G+ IA A Q L +F
Sbjct: 83 QDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFL--DNFKTPV 140
Query: 439 NLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLK 567
+ + + L+ +ARTTL +K+ + T + V++VL ++
Sbjct: 141 VMGDEVDKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIR 183
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 74.9 bits (176), Expect = 5e-14
Identities = 52/194 (26%), Positives = 97/194 (50%), Gaps = 4/194 (2%)
Frame = +1
Query: 88 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDE 267
+ + +++LGP GM+K++++ + ++ VTND ATI+ + + +PAAK+LV +K Q E
Sbjct: 39 LSTITRTSLGPNGMNKMVIN---HLDKLFVTNDAATIVNELEIQHPAAKLLVLAAKAQQE 95
Query: 268 EVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKNLN 447
E+GDG +LI LHP II+G+ A A + L E +
Sbjct: 96 EIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAVEIL-EQLVETGSETM 154
Query: 448 EASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRL----KGSGNLKAIQIIKISGG 615
+ + ++ + R ++SK +E L DA +++ + N+ +++ K+ GG
Sbjct: 155 DVRNKDEVISRMRAAVASKQF-GQEEIICSLVTDACIQVCPKNPTNFNVDNVRVSKLLGG 213
Query: 616 LLEESFLDEXVLAK 657
L S + ++ K
Sbjct: 214 GLHNSCIVRGMVLK 227
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 72.5 bits (170), Expect = 3e-13
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Frame = +1
Query: 214 VDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 393
VDN AK++V++S+ QD E+GDGTT V V + +++ +HP I G+ +AS
Sbjct: 3 VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASR 62
Query: 394 AAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRL--- 564
A + L + + ++N L TTLSSKI++ K ++AV AVL +
Sbjct: 63 VAVEHLERIAQKFEFDVNNYE---PLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADL 119
Query: 565 -KGSGNLKAIQIIKISGGLLEESFLDEXVL 651
+ NL I++ GG LE++ L +L
Sbjct: 120 ERRDVNLDLIKVEGKVGGKLEDTELIYGIL 149
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Frame = +1
Query: 76 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIG----VDNPAAKILV 243
G + D VK T+GPKG + I+ ++ G +VT DG T+ KSI + N A ++
Sbjct: 50 GVEDLADAVKVTMGPKGRNVIIE---QSWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVK 106
Query: 244 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 393
++ ++ GDGTT TV K + ++ + G ++A D
Sbjct: 107 QVANATNDVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVD 156
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Frame = +1
Query: 76 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIG----VDNPAAKILV 243
G + D VK T+GPKG + ++ ++ G +VT DG T+ KSI + N A ++
Sbjct: 49 GVEDLADAVKVTMGPKGRNVVIE---QSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVK 105
Query: 244 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDA 396
++ ++ GDGTT TV K + ++ + G +A DA
Sbjct: 106 QVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDA 156
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 48.4 bits (110), Expect = 5e-06
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +1
Query: 76 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNP----AAKILV 243
G + DLV TLGPKG + +L S G + NDG T+ + + +++P AK++
Sbjct: 70 GVNKLADLVGVTLGPKGRNVVLES---KYGSPRIVNDGVTVAREVELEDPVENIGAKLVR 126
Query: 244 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAG 375
+ ++ GDGTT+ V K++ +P I G
Sbjct: 127 QAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 170
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 48.0 bits (109), Expect = 7e-06
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +1
Query: 76 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNP----AAKILV 243
G + DLV TLGPKG + +L S G + NDG T+ + + +++P AK++
Sbjct: 70 GVNKLADLVGVTLGPKGRNVVLES---KYGSPRIVNDGVTVAREVELEDPVENIGAKLVR 126
Query: 244 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAG 375
+ ++ GDGTT+ V K++ +P I G
Sbjct: 127 QAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRG 170
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 48.0 bits (109), Expect = 7e-06
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +1
Query: 76 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNP----AAKILV 243
G + DLV TLGPKG + +L S G + NDG T+ + + +++P AK++
Sbjct: 74 GVNKLADLVGVTLGPKGRNVVLES---KYGSPRIVNDGVTVAREVELEDPVENIGAKLVR 130
Query: 244 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAG 375
+ ++ GDGTT+ V K++ +P I G
Sbjct: 131 QAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRG 174
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 48.0 bits (109), Expect = 7e-06
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +1
Query: 76 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNP----AAKILV 243
G + DLV TLGPKG + +L S G + NDG T+ + + +++P AK++
Sbjct: 74 GVNKLADLVGVTLGPKGRNVVLES---KYGSPRIVNDGVTVAREVELEDPVENIGAKLVR 130
Query: 244 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAG 375
+ ++ GDGTT+ V K++ +P I G
Sbjct: 131 QAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRG 174
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +1
Query: 58 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIG----VDNP 225
R + G + + VK T+GPKG + I+ S + G ++T DG T+ KSI N
Sbjct: 43 RAAMLQGVSEVAEAVKVTMGPKGRNVIIES---SYGGPKITKDGVTVAKSISFQAKAKNI 99
Query: 226 AAKILVDMSKVQDEEVGDGTTSVTV 300
A+++ ++ ++ GDGTT TV
Sbjct: 100 GAELVKQVASATNKVAGDGTTCATV 124
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = +1
Query: 76 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIG----VDNPAAKILV 243
G + D V TLGP+G + +L ++V NDG TI KSI ++N A ++
Sbjct: 51 GIDKLADAVSITLGPRGRNVVLAE----KDTIKVINDGVTIAKSIELPDTIENAGATLIQ 106
Query: 244 DMSKVQDEEVGDGTTSVTV 300
+++ +E GDGTT+ +
Sbjct: 107 EVAIKMNESAGDGTTTAII 125
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 44.8 bits (101), Expect = 6e-05
Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 6/176 (3%)
Frame = +1
Query: 76 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSI----GVDNPAAKILV 243
G + D V TLGP+G + +L G +V NDG TI ++I ++N A ++
Sbjct: 64 GIDKLADCVGLTLGPRGRNVVL----DEFGSPKVVNDGVTIARAIELPNAMENAGAALIR 119
Query: 244 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEAS 423
+++ ++ GDGTT+ ++ + +P ++ G D Q L E
Sbjct: 120 EVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRG----IDKTVQGLIE-- 173
Query: 424 FDHQKNLNEASLRVDLENIARTTLSSKIL--SNHKEHFTKLAVDAVLRLKGSGNLK 585
+ QK R D+ +A + + L S + K+ D VL ++ S + +
Sbjct: 174 -ELQKKARPVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIESSSSFE 228
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +1
Query: 76 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNP----AAKILV 243
GA + L+ TLGPKG + +L + G + NDG T+LK I +++P K++
Sbjct: 58 GADMVAKLLGVTLGPKGRNVVLQN---KYGPPRIVNDGETVLKEIELEDPLENVGVKLVR 114
Query: 244 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAG 375
++ GDG+T+ + K+I +P + G
Sbjct: 115 QAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARG 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,064,428
Number of Sequences: 28952
Number of extensions: 256670
Number of successful extensions: 590
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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