Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1083
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    25   0.85 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       24   1.5  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    23   2.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   6.0  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 266 GTIF-GMMLYVLVLNAGQTKPCFNF*AIWGC 177
           G +F G+++++L    G T P FN   ++ C
Sbjct: 133 GIVFAGLIVFILFFAQGLTSPIFNLVYVYCC 163


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 234 ENVEHHAKYRSK--KGQLPFVEL 296
           EN++HHA  R K  KG++  +E+
Sbjct: 380 ENLKHHANLRQKNQKGEVTVLEI 402


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 312 ADSTFIIKDLSEKYNKDLDAGLTSEQRVISH 404
           A +  + ++ + +YN +LDA L SE+ + S+
Sbjct: 11  ACTNVLSEEYTNQYNDELDAALKSERLMKSY 41


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 684 PTILLWRRTNSPP 722
           PTI  W  T+SPP
Sbjct: 319 PTINCWSLTSSPP 331


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,950
Number of Sequences: 336
Number of extensions: 3890
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)