Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1083
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.06 |tim14||TIM23 translocase complex subunit Tim14|Schiz...    25   8.7  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   8.7  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    25   8.7  

>SPAC824.06 |tim14||TIM23 translocase complex subunit
           Tim14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 536 GVWQTRVQRTLKIHLVSLNDTVRVLGAPPENHPRQVVLDHGDHG 405
           G +++++ R   I ++SLN+         E H R ++ +H D G
Sbjct: 41  GGFESKMSRAEAIQILSLNNRTLTRQKIKEAHRRLMLANHPDRG 84


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = +3

Query: 117  NFEKDVVYLYQFSRTPLLPSTSPYCL-KVETWLRLAGIK--YENVEHHAKYRS--KKGQL 281
            NF   +  +   +  P+    + Y L K E  + L+G++   E  ++ + YR+  +K +L
Sbjct: 836  NFSTLMSIVSALNSAPIYRLHAAYKLVKAEDIICLSGLREIVETKKNFSTYRALLRKAEL 895

Query: 282  PFVELNGEEIADSTFI 329
            P V   G  ++D TFI
Sbjct: 896  PCVPFLGVILSDLTFI 911


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 34  HYQMRKAMKNLKRKNPNQLSRNQQSI 111
           +YQM KA++ LK+  P  L    QS+
Sbjct: 3   YYQMMKALRMLKKPKPGCLGIEIQSV 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,483
Number of Sequences: 5004
Number of extensions: 66259
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)