Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1083
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12446| Best HMM Match : No HMM Matches (HMM E-Value=.)              92   4e-19
SB_46116| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   5e-18
SB_47009| Best HMM Match : WSC (HMM E-Value=0.16)                      81   7e-16
SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   5e-15
SB_53541| Best HMM Match : GST_C (HMM E-Value=0.02)                    72   6e-13
SB_53542| Best HMM Match : GST_C (HMM E-Value=0.018)                   65   7e-11
SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)                  50   2e-06
SB_31646| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)                    32   0.57 
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_2625| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  

>SB_12446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 51/145 (35%), Positives = 78/145 (53%)
 Frame = +3

Query: 135 VYLYQFSRTPLLPSTSPYCLKVETWLRLAGIKYENVEHHAKYRSKKGQLPFVELNGEEIA 314
           V L+Q    P +P   P  LK+ET+LR+  I YEN  + +K  S K ++PF+E  G+++ 
Sbjct: 275 VILHQHPPGPTIPGFLPNSLKLETYLRMVKIPYENF-YESKLGSSKEKVPFIEYQGDKVQ 333

Query: 315 DSTFIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENHLSWVILWWRAKYPDSVIKGYQ 494
           D+ F IK L++K+N D DA L++EQ+ + HA+ +M E +  W + ++R        K Y 
Sbjct: 334 DTNFCIKYLNKKFNVDPDAHLSAEQKAMCHAIQAMAEENTYWSLAYYRWVDNYQETKKYY 393

Query: 495 VNLQSALNTRLPNPILNFCYKFTSA 569
            NL        P    N C K   A
Sbjct: 394 SNLAPVYKDLRPKLDQNKCIKCMQA 418



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +1

Query: 583 KKARAHGIGVHSQDEIIEFWEERFXVCSLICLTDRPFFFGDEPTLL 720
           K  +AHGIG H+++EI    EE     S + L ++ FF   EP  L
Sbjct: 414 KCMQAHGIGKHTKEEIYAIAEEDLRAMSAL-LGEKEFFMDSEPCTL 458


>SB_46116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 42/108 (38%), Positives = 69/108 (63%)
 Frame = +3

Query: 135 VYLYQFSRTPLLPSTSPYCLKVETWLRLAGIKYENVEHHAKYRSKKGQLPFVELNGEEIA 314
           V L+Q    P +P   P  LK+ET+LR+  I YEN  + +K  S K ++PF+E  G+++ 
Sbjct: 39  VILHQHPPGPTIPGFLPNSLKLETYLRMVKIPYENF-YESKLGSSKEKVPFIEYQGDKVQ 97

Query: 315 DSTFIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENHLSWVILWWR 458
           D+ F IK L++K+N D DA L++EQ+ + HA+ +M E +  W + ++R
Sbjct: 98  DTNFCIKYLNKKFNVDPDAHLSAEQKAMCHAIQAMAEENTYWSLAYYR 145


>SB_47009| Best HMM Match : WSC (HMM E-Value=0.16)
          Length = 852

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 41/105 (39%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
 Frame = +3

Query: 123 EKDVVYLYQFSRTPLLP--STSPYCLKVETWLRLAGIKYENVEHHAKYRSKKGQLPFVEL 296
           +++ V L+QF R P LP  + SP CLK+ETW+R+A I Y+   + A  +S KG+ P++E 
Sbjct: 598 DQNPVILHQFPRNPRLPVPNISPPCLKLETWMRMAKIPYD--VNTAFKKSSKGKFPWIEH 655

Query: 297 NGEEIADSTFIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENH 431
            G+ +ADS F I+ L+ ++  DLD GL+   + ++ A   M+E +
Sbjct: 656 KGKHVADSQFCIEYLTREFGVDLDEGLSEADKAVATAFRVMLEEN 700



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 598 HGIGVHSQDEIIEFWEERFXVCSLICLTDRPFFFGDEP 711
           HGIG H++DEI    E      S   L  + F  GD+P
Sbjct: 740 HGIGRHTEDEIYNLGERDLAALSGF-LGSKKFLLGDKP 776


>SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 38/102 (37%), Positives = 68/102 (66%)
 Frame = +3

Query: 126 KDVVYLYQFSRTPLLPSTSPYCLKVETWLRLAGIKYENVEHHAKYRSKKGQLPFVELNGE 305
           K VV L Q +    +PS SP+ LK+E++LRLA I Y+N  + +   S KG++P++E NG+
Sbjct: 27  KGVVLLRQPAVATTVPSISPFPLKLESYLRLAKIPYKN--YFSSTSSSKGKIPWIEYNGQ 84

Query: 306 EIADSTFIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENH 431
            +ADS F ++ L++++  DLDA L+++ R ++  +  M++ +
Sbjct: 85  CVADSNFCVEFLNKEFGVDLDAKLSAKDRAVARTLAVMLDEN 126


>SB_53541| Best HMM Match : GST_C (HMM E-Value=0.02)
          Length = 256

 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 37/104 (35%), Positives = 62/104 (59%)
 Frame = +3

Query: 147 QFSRTPLLPSTSPYCLKVETWLRLAGIKYENVEHHAKYRSKKGQLPFVELNGEEIADSTF 326
           +F++ P+ PS SP CLK+ET+ R+A I+Y    + A     K  +P VE +G+ +  S  
Sbjct: 15  RFAKLPV-PSISPSCLKLETYARMANIQYH--VNTACENIDKVNMPAVEYDGKVVVHSAR 71

Query: 327 IIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENHLSWVILWWR 458
            I  L+E+Y  +LD  L+ EQ+  +  + +M++ H SW +L+ R
Sbjct: 72  CIPYLNERYGVELDRDLSEEQKATATTITAMLDEHTSWTLLYHR 115



 Score = 35.1 bits (77), Expect = 0.061
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 583 KKARAHGIGVHSQDEIIEFWEERFXVCSLICLTDRPFFFGDEP 711
           KK +A G+G H++ E+    E      S + L D+P+ FGD P
Sbjct: 150 KKLQAQGMGRHTEAEVYSLAERDLRAVSTL-LGDKPYLFGDRP 191


>SB_53542| Best HMM Match : GST_C (HMM E-Value=0.018)
          Length = 261

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 42/146 (28%), Positives = 76/146 (52%)
 Frame = +3

Query: 147 QFSRTPLLPSTSPYCLKVETWLRLAGIKYENVEHHAKYRSKKGQLPFVELNGEEIADSTF 326
           +F++ P+ PS SP CLK+ET+ R+A I+Y    + A     K  +P +E + + +  S  
Sbjct: 21  RFAKLPV-PSISPSCLKLETYARMANIQYH--VNTACENIDKVNMPAIEYDDKVVVHSAR 77

Query: 327 IIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENHLSWVILWWRAKYPDSVIKGYQVNLQ 506
            I  L+E+Y  +LD  L+ EQ+  +  + +M++   SW + + R  +     K Y+  L 
Sbjct: 78  CIPYLNERYGLELDRDLSEEQKATATTITAMLDEKTSWTLHYHR--WCSDYAKQYKDELM 135

Query: 507 SALNTRLPNPILNFCYKFTSARKGMK 584
             LN+      + FC   + A+K ++
Sbjct: 136 YGLNSIFRK--IAFCVFKSDAQKKLE 159



 Score = 35.9 bits (79), Expect = 0.035
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 583 KKARAHGIGVHSQDEIIEFWEERFXVCSLICLTDRPFFFGDEP 711
           KK  A GIG H++ E+    E      S + L D+P+ FGD P
Sbjct: 156 KKLEAQGIGRHTEAEVYSLAERDLRAVSTL-LGDKPYLFGDRP 197


>SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
          Length = 1432

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 26/64 (40%), Positives = 41/64 (64%)
 Frame = +3

Query: 195  KVETWLRLAGIKYENVEHHAKYRSKKGQLPFVELNGEEIADSTFIIKDLSEKYNKDLDAG 374
            K+ET+LR+  I Y+ V  +    S KG+LP++E  G+ IADS F +  L++++  D+D  
Sbjct: 1169 KLETFLRMTKIPYKTV--YGWNPSSKGKLPWIEYQGKSIADSNFCVDFLNKEFFVDVDEH 1226

Query: 375  LTSE 386
            LT E
Sbjct: 1227 LTVE 1230



 Score = 32.7 bits (71), Expect = 0.33
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 592  RAHGIGVHSQDEIIEFWEERFXVCSLICLTDRPFFFGDEPTLL 720
            +AHG+G H+++EI    E      S + L D+ + FG+ P LL
Sbjct: 1333 QAHGMGRHTEEEIYAIAERDLKGISAL-LGDQKYMFGERPCLL 1374


>SB_31646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +1

Query: 574 RV*KKARAHGIGVHSQDEIIEFWEERFXVCSLICLTDRPFFFGDEPTLL 720
           RV +    HGIG HS+DEI     +     S I L D+ F  G++PTL+
Sbjct: 38  RVNQYLDGHGIGRHSRDEIYFIALKDLSAVSEI-LGDKAFLMGNKPTLV 85


>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
          Length = 843

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 237 NVEHHA-KYRSKKGQLPFVELNGEEIADSTFIIKDLSEKYNKDLDAGLTSEQRVI 398
           +VE H  KY   +G    V+   EE+   T I+KD++ +Y ++L A +   ++V+
Sbjct: 588 SVERHGDKYIKARGD---VQRMIEEVKQETIIVKDVARRYYRELRAAIDEGEKVL 639


>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 555 CSRSSVWGLADACSAHSEDSLGIP**HCPGTWRATRESPTTGGSR 421
           C R+  W  A   S H++D   +   HC   ++A R     GG+R
Sbjct: 85  CHRTCFWRWAHNHSIHADDPFEVACPHCRHVYQAYRYRRPRGGAR 129


>SB_2625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = -3

Query: 631 LFHLDCARRFRELWPFFIPLRADVNL*QKFSMGFGRRVFSAL*RFTWYPLMTLSGYLARH 452
           LF + C+ + R +  F +  R+ V   Q++   +G   + A  R++  P   L GYLARH
Sbjct: 10  LFTILCSFQVRSI-SFLLADRSPVASQQRYWSAYG---YEAPQRWSPAPRFELRGYLARH 65

Query: 451 QRITHDRW 428
            RI   R+
Sbjct: 66  IRIKAHRF 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,230,836
Number of Sequences: 59808
Number of extensions: 499364
Number of successful extensions: 3140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3133
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)