Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1081
         (500 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9UIL4 Cluster: Kinesin-like protein KIF25; n=2; Euther...    33   4.8  
UniRef50_UPI0000F2C24B Cluster: PREDICTED: hypothetical protein;...    32   6.3  

>UniRef50_Q9UIL4 Cluster: Kinesin-like protein KIF25; n=2;
           Eutheria|Rep: Kinesin-like protein KIF25 - Homo sapiens
           (Human)
          Length = 384

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +2

Query: 260 LLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCLRSLVSTFLQRTPA 406
           LL   LG D  L+VI+C++ S ++ + TL  LG+ +R   +  +QR PA
Sbjct: 323 LLQDCLGGDAKLLVILCISPSQRHLAQTLQGLGFGIR---ARQVQRGPA 368


>UniRef50_UPI0000F2C24B Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 466

 Score = 32.3 bits (70), Expect = 6.3
 Identities = 15/38 (39%), Positives = 26/38 (68%)
 Frame = +2

Query: 260 LLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCLRS 373
           LL  ++G D  L+V++CV+   KY ++TL +LG+  R+
Sbjct: 374 LLQDSIGGDAKLLVLLCVSPCQKYLAETLQSLGFGSRA 411


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 423,951,098
Number of Sequences: 1657284
Number of extensions: 6956384
Number of successful extensions: 13359
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13358
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)