Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1080
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 4e-22
SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35) 101 7e-22
SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_4956| Best HMM Match : ThiF (HMM E-Value=0) 62 6e-10
SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 6e-10
SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 0.68
SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 101 bits (243), Expect = 4e-22
Identities = 48/110 (43%), Positives = 64/110 (58%)
Frame = +3
Query: 276 LLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPDSFFT 455
+LDN + + D SQFL P + +G NRAE SL R + LNPMV V++ + D+F
Sbjct: 1 MLDNNPVTERDFVSQFLAPREALGKNRAEASLARTQALNPMVAVSADKNNITAKADTFLD 60
Query: 456 EFDVVCATGLKQEQFERINNACRDSNKKFICGDVWGTYGYMFSDLVDHEY 605
+FDVV ATG + ++ CR N KF DV+G YGYMF+DL Y
Sbjct: 61 DFDVVVATGCSSDILANLDERCRAKNIKFFASDVFGFYGYMFADLGKDRY 110
>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
Length = 1026
Score = 101 bits (241), Expect = 7e-22
Identities = 61/168 (36%), Positives = 88/168 (52%)
Frame = +3
Query: 84 QKMVGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGV 263
Q + + E + + Y RQ+ + G ++ K++ + VLI GL GLG EIAKNV+L GV
Sbjct: 42 QSVRDEGQAEKMDIDEGLYSRQLYVLGHEAMKKMAVSNVLISGLRGLGVEIAKNVVLGGV 101
Query: 264 KSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPD 443
KSV L D ++ DL SQF +G NRAE S R LN V ++ +T+ +L +
Sbjct: 102 KSVTLHDTGAVELSDLTSQFFLNKKDVGKNRAEVSHPRIAELNTYVSMSVNTQ---KLTE 158
Query: 444 SFFTEFDVVCATGLKQEQFERINNACRDSNKKFICGDVWGTYGYMFSD 587
F +F VV T E+ I++ C K I D G +G +F D
Sbjct: 159 EFINKFQVVVLTESSLEEQLWISDFCHSKGIKLIISDTKGLFGQIFCD 206
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +3
Query: 135 QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKS-----VCLLDNEKLK 299
+YD QI ++G + QK+L K ++G +G E KN + G+ S + D + ++
Sbjct: 324 RYDGQIAVFGSEFQKKLGQQKYFVVGAGAIGCEHLKNFAMMGLGSGEGGHIYTTDMDTIE 383
Query: 300 QIDLYSQFLCPP 335
+ +L QFL P
Sbjct: 384 KSNLNRQFLFRP 395
>SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 72.1 bits (169), Expect = 4e-13
Identities = 43/113 (38%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Frame = +3
Query: 102 NEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLL 281
N+VE+ ++ Y RQ + G + +++ A V + G+ GLG EIAKN+ L G+KS+ L
Sbjct: 3 NKVEIDDS---LYSRQRYMLGDQAMQKMAHASVFLSGVGGLGVEIAKNLTLAGIKSITLH 59
Query: 282 DNEKLKQIDLYSQFLCPPDKI--GVNRAEGSLERARGLNPMVDVTSHTKGVDE 434
D DL SQF D + NRA S R LNP V V + T +DE
Sbjct: 60 DTRAASMADLGSQFFLREDDVTSSRNRAVASAGRVAELNPYVSVHTQTDALDE 112
>SB_4956| Best HMM Match : ThiF (HMM E-Value=0)
Length = 213
Score = 61.7 bits (143), Expect = 6e-10
Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Frame = +3
Query: 180 RLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRA 359
++ +K+L++G G+G E+ KN++LTG K++ L+D + + +L QFL +G ++A
Sbjct: 20 KVNNSKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQFLFHKQHVGKSKA 79
Query: 360 EGSLERARGLNPMVDVTSHTKGV--DELPDSFFTEFDVVCATGLKQEQFERINNACRDSN 533
+ + E A NP + + + E +F +FDVV + +N C ++
Sbjct: 80 KVARESALRFNPDAKIVAIHDNITSPEYGIDYFKQFDVVMNALDNRAARNHVNRMCLAAD 139
Query: 534 KKFICGDVWGTYGYM 578
+ GT GY+
Sbjct: 140 VPLVES---GTAGYL 151
>SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 61.7 bits (143), Expect = 6e-10
Identities = 36/135 (26%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Frame = +3
Query: 180 RLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRA 359
++ +K+L++G G+G E+ KN++LTG K++ L+D + + +L QFL +G ++A
Sbjct: 20 KVNNSKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQFLFHKQHVGKSKA 79
Query: 360 EGSLERARGLNPMVDVTSHTKGV--DELPDSFFTEFDVVCATGLKQEQFERINNACRDSN 533
+ + E A NP + + + E +F +FDVV + +N C ++
Sbjct: 80 KVARESALRFNPDAKIVAIHDNITSPEYGIDYFKQFDVVMNALDNRAARNHVNRMCLAAD 139
Query: 534 KKFICGDVWGTYGYM 578
+ ++ GT GY+
Sbjct: 140 VPLV--EI-GTAGYL 151
>SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 529
Score = 54.0 bits (124), Expect = 1e-07
Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 3/172 (1%)
Frame = +3
Query: 114 LSEAEAEQYDRQIRL--WGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDN 287
L+ +E +Y RQ+ L G+ Q+ L+++ VL++G GLG A + G+ + L+D
Sbjct: 52 LTNSEISRYSRQLILPEIGVKGQQSLKSSSVLVVGAGGLGCPAALYLAAAGIGCLGLVDY 111
Query: 288 EKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPD-SFFTEFD 464
+ + +L+ Q L D++ V + E + + LN +H ++ + ++D
Sbjct: 112 DVVDTSNLHRQVLHTEDRVEVPKVESAKQTLLRLNSDAQYNTHCLQLNSVNALDIINKYD 171
Query: 465 VVCATGLKQEQFERINNACRDSNKKFICGDVWGTYGYMFSDLVDHEYSXGDC 620
V+ +N+AC + K + G G LV + + G C
Sbjct: 172 VIVDATDNVATRYLLNDACVLAKKPLVSGSALRLEG----QLVVYNHDNGPC 219
>SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 594
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 414 HTKGVDELPDSFFTEFDVVCATGLKQEQFERINNACRDSNKKFICGDVWGTY 569
HT+GVDE SF E +C GL+ + R + NK F+C + T+
Sbjct: 429 HTQGVDE--KSFVCE---ICGKGLRTKSSLRDHRKTHTDNKPFVCEECGKTF 475
>SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +3
Query: 90 MVGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKS 269
M+G L + + + LW L+ +K A+V+IIG LG A ++ G+K
Sbjct: 256 MIGQTHRYLRSDWLKVTEACVVLWPLN-KKLKEDAEVVIIGGGCLGVSTAYHLAKRGLKD 314
Query: 270 VCLLDNEKL 296
V LL+ +L
Sbjct: 315 VVLLEKSEL 323
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +2
Query: 179 ETTCSESINHRLVRTRR*NCKKRNPHRCKKCVFVRQ*ETETNRSVLPISVSS*QDRRKSS 358
E TC +S N ++ R C R +C+ C F + E N +V ++ S ++R S
Sbjct: 1083 EKTCRDS-NQGVIE--RHTCGARGNLKCRNCGFGDEMSQEGNSTVSSVATGSDEERSSES 1139
Query: 359 RGFVGK 376
+ + K
Sbjct: 1140 QWQIPK 1145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,513,618
Number of Sequences: 59808
Number of extensions: 412137
Number of successful extensions: 1858
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1852
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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