Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1080
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical pr... 98 5e-21
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 95 3e-20
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 95 3e-20
U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula (ubiq... 82 3e-16
AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical ... 59 3e-09
Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 56 2e-08
U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 56 3e-08
U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical p... 44 1e-04
Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical p... 39 0.003
AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical ... 39 0.003
AL033508-1|CAA22058.2| 821|Caenorhabditis elegans Hypothetical ... 28 7.4
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL031634-3|CAA21036.1| 556|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical
protein C08B6.9 protein.
Length = 343
Score = 98.3 bits (234), Expect = 5e-21
Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 6/172 (3%)
Frame = +3
Query: 108 VELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDN 287
+E+S+AE YDRQIRLWG+++Q ++R +KVLIIG LGAE+AK + L GV + L+D+
Sbjct: 1 MEVSKAEQAIYDRQIRLWGMEAQNKIRNSKVLIIGGKQLGAEVAKTLSLAGVDEMHLVDH 60
Query: 288 EKLKQIDLYSQFL--CPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGV----DELPDSF 449
+ ++ FL D + + S LN V + + V D + +
Sbjct: 61 RLVDTEEIGMNFLYDASVDNSKMTKWAASYNFLYNLNRNVKLFIVEEDVLSKNDSEIEEY 120
Query: 450 FTEFDVVCATGLKQEQFERINNACRDSNKKFICGDVWGTYGYMFSDLVDHEY 605
T+F +V E+ ++NN CR + +FI G ++G GY F D H Y
Sbjct: 121 LTKFTLVVVLDESYERTAKVNNICRKHHIRFISGAIYGWIGYAFFDFDGHAY 172
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 95.5 bits (227), Expect = 3e-20
Identities = 62/169 (36%), Positives = 84/169 (49%)
Frame = +3
Query: 93 VGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSV 272
VG N EL + Y RQI G + LR A VLI GL +G EIAKN+IL GV+ V
Sbjct: 10 VGGNSDELLDKNL--YSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKNLILGGVRHV 67
Query: 273 CLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPDSFF 452
+ D + K DL +Q+ +G NRA ER LN V+V T DEL + F
Sbjct: 68 TIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVNVQVST---DELTEEFV 124
Query: 453 TEFDVVCATGLKQEQFERINNACRDSNKKFICGDVWGTYGYMFSDLVDH 599
FD+V T + +I R N++ + D G + Y+F+D D+
Sbjct: 125 KTFDLVVLTDAARTAQRQIAAWTRAHNRRILITDARGVFSYIFNDFGDN 173
Score = 34.7 bits (76), Expect = 0.064
Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Frame = +3
Query: 111 ELSEAEAE----QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKS--- 269
+LSE + + +YD Q ++G Q+ L + ++G +G E+ KN+ + GV
Sbjct: 402 KLSETDCQPRQSRYDGQAAVFGWPYQECLFRQRWFVVGAGAIGCELLKNLSMMGVACGEG 461
Query: 270 --VCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPD 443
+ + D ++++ +L QFL +G ++E + N V + + + V +
Sbjct: 462 GLIKITDMDQIEISNLNRQFLFRRRDVGGKKSECAARAVTAFNSDVRIEALAERVGLETE 521
Query: 444 SFFTE 458
F +
Sbjct: 522 HIFND 526
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 95.5 bits (227), Expect = 3e-20
Identities = 62/169 (36%), Positives = 84/169 (49%)
Frame = +3
Query: 93 VGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSV 272
VG N EL + Y RQI G + LR A VLI GL +G EIAKN+IL GV+ V
Sbjct: 95 VGGNSDELLDKNL--YSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKNLILGGVRHV 152
Query: 273 CLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPDSFF 452
+ D + K DL +Q+ +G NRA ER LN V+V T DEL + F
Sbjct: 153 TIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVNVQVST---DELTEEFV 209
Query: 453 TEFDVVCATGLKQEQFERINNACRDSNKKFICGDVWGTYGYMFSDLVDH 599
FD+V T + +I R N++ + D G + Y+F+D D+
Sbjct: 210 KTFDLVVLTDAARTAQRQIAAWTRAHNRRILITDARGVFSYIFNDFGDN 258
Score = 34.7 bits (76), Expect = 0.064
Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Frame = +3
Query: 111 ELSEAEAE----QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKS--- 269
+LSE + + +YD Q ++G Q+ L + ++G +G E+ KN+ + GV
Sbjct: 487 KLSETDCQPRQSRYDGQAAVFGWPYQECLFRQRWFVVGAGAIGCELLKNLSMMGVACGEG 546
Query: 270 --VCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPD 443
+ + D ++++ +L QFL +G ++E + N V + + + V +
Sbjct: 547 GLIKITDMDQIEISNLNRQFLFRRRDVGGKKSECAARAVTAFNSDVRIEALAERVGLETE 606
Query: 444 SFFTE 458
F +
Sbjct: 607 HIFND 611
>U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula
(ubiquitin activating)homolog protein 1 protein.
Length = 541
Score = 82.2 bits (194), Expect = 3e-16
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Frame = +3
Query: 135 QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLY 314
+YDRQ+RLWG + Q + + ++G L EI K+++L GV+S ++D+ K++Q D+
Sbjct: 9 RYDRQVRLWGEEGQASIGSTSACVLGSDSLATEILKSLVLAGVQSFYVVDDAKVEQADIG 68
Query: 315 SQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDEL---PDSFFTEFDVVCATGL 485
F D IG +RAE +LE+ LNP V ++ ++ L T F VV A
Sbjct: 69 QNFFLHADDIGRSRAEATLEKLTELNPSVSGSASSQPPTALAMEDVEKLTTFSVVVAANQ 128
Query: 486 KQEQFERINNACRDSNKKFICGDVWGTYGYMFSDLVDH 599
+E + FIC +G G + + +H
Sbjct: 129 NEEIDTTFAKVLYNIRVPFICIKTFGLIGTIRICIKEH 166
>AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical
protein F42G8.6 protein.
Length = 402
Score = 58.8 bits (136), Expect = 3e-09
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Frame = +3
Query: 114 LSEAEAEQYDRQIRL--WGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDN 287
+S+ +A +Y RQ+ + +G+ QK L+ VLI+G GLG +A + G+ ++ ++D
Sbjct: 10 ISKKDAGRYSRQLLVDDFGVSGQKNLKNLNVLIVGAGGLGCPVATYLGAAGIGTIGIVDY 69
Query: 288 EKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDEL-PDSFFTEFD 464
+ + +L+ Q D++G ++A+ + + N ++V H +D F ++
Sbjct: 70 DHISLDNLHRQVAYKEDQVGKSKAQALADNIKLQNSDLNVQVHNTSLDSSNAMQLFKNYE 129
Query: 465 VVCATGLKQEQFERINNACRDSNKKFICG 551
+VC IN+ C N + G
Sbjct: 130 IVCDCTDNVATRYLINDVCVLLNIPLVSG 158
>Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical
protein W02A11.4 protein.
Length = 582
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/137 (22%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Frame = +3
Query: 168 DSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIG 347
+ +++ +K+L+IG G+G E+ KN+ +TG + V ++D + + +L QFL + +
Sbjct: 6 EKHEKIVQSKILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNRQFLFRKEHVS 65
Query: 348 VNRAEGSLERARGLNPMVDVTSHTKGVDELPDS--FFTEFDVVCATGLKQEQFERINNAC 521
++A + + + P +++T + E + FF +D+V + +N C
Sbjct: 66 SSKAATATQVVKQFCPQIELTFDHDSIFEKKYNMEFFQAYDIVLNALDNRAARNYVNRMC 125
Query: 522 RDSNKKFICGDVWGTYG 572
+N+ I G +G
Sbjct: 126 HAANRPLIDSGSGGYFG 142
>U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane
ruffles in embryoprotein 1 protein.
Length = 430
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/103 (26%), Positives = 57/103 (55%)
Frame = +3
Query: 162 GLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPDK 341
G ++ + L+ K+L+IG GLG E+ KN+ L+G +++ ++D + + +L QFL
Sbjct: 33 GPENFEALQNTKILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSNLNRQFLFRESD 92
Query: 342 IGVNRAEGSLERARGLNPMVDVTSHTKGVDELPDSFFTEFDVV 470
+G ++AE + + VT+H +++ F+ +F ++
Sbjct: 93 VGKSKAEVAAAFVQQRVVGCQVTAHNCRIEDKGQEFYRKFSII 135
>U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical
protein T03F1.1 protein.
Length = 419
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/101 (22%), Positives = 55/101 (54%)
Frame = +3
Query: 153 RLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCP 332
R+ ++ +R+R V ++G+ G+G+ +A+ + G+ + L D +K+ +I ++
Sbjct: 72 RMGIVNEYERIREKTVAVVGVGGVGSVVAEMLTRCGIGKLILFDYDKV-EIANMNRLFYQ 130
Query: 333 PDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPDSFFT 455
P++ G+++ E + + +NP V + H + + D+F T
Sbjct: 131 PNQAGLSKVEAARDTLIHVNPDVQIEVHNFNITTM-DNFDT 170
>Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = +3
Query: 177 KRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPD--KIGV 350
+R KVLI+G LG IA+ +I GV+ + LDN + + Q L + ++G
Sbjct: 320 ERYSQLKVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEFEDARLGR 379
Query: 351 NRAEGSLERARGLNPMVDVTSHTKGVDELPDSFFTEFDV 467
+AE + + + P + T+H V +P E DV
Sbjct: 380 GKAETAQAAIQRIFPSIQATAHRLTV-PMPGHSIDEKDV 417
>AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = +3
Query: 177 KRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFLCPPD--KIGV 350
+R KVLI+G LG IA+ +I GV+ + LDN + + Q L + ++G
Sbjct: 320 ERYSQLKVLILGAGTLGCNIARCLIGWGVRHISFLDNSTVSYNNPVRQSLSEFEDARLGR 379
Query: 351 NRAEGSLERARGLNPMVDVTSHTKGVDELPDSFFTEFDV 467
+AE + + + P + T+H V +P E DV
Sbjct: 380 GKAETAQAAIQRIFPSIQATAHRLTV-PMPGHSIDEKDV 417
>AL033508-1|CAA22058.2| 821|Caenorhabditis elegans Hypothetical
protein Y106G6G.2 protein.
Length = 821
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 434 LIYALSMTCDIDHRI-QASSSFQRTLCSIYADLVRRTQKL 318
+I A T ID I Q SS+F CS++AD + K+
Sbjct: 509 IIAAPKNTLSIDEAILQFSSNFYENFCSVHADAYKSRSKI 548
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 165 LDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEK 293
+DS + ++ GLSG+G EI K + G ++V L+ +
Sbjct: 3195 VDSDSPITGNWLITGGLSGIGLEIGKFIANNGAENVILISRRQ 3237
>AL031634-3|CAA21036.1| 556|Caenorhabditis elegans Hypothetical
protein Y32B12C.3 protein.
Length = 556
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/74 (24%), Positives = 29/74 (39%)
Frame = +3
Query: 87 KMVGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVK 266
K G V+ +E +DR + LD Q + + L + + E KN+
Sbjct: 297 KTYGKCCVDEETSEGHAWDRFTKEMILDLQNQKSVIQELCVNATRPENETEKNIFKLSAS 356
Query: 267 SVCLLDNEKLKQID 308
+C L LK +D
Sbjct: 357 IICALLENSLKSLD 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,387,809
Number of Sequences: 27780
Number of extensions: 314109
Number of successful extensions: 867
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -