Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1078
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 333 7e-92
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 329 1e-90
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 329 1e-90
SB_56| Best HMM Match : Actin (HMM E-Value=0) 327 4e-90
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 326 1e-89
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 1e-46
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 160 1e-39
SB_54| Best HMM Match : Actin (HMM E-Value=0) 111 5e-25
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 97 9e-21
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 84 1e-16
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 67 1e-11
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 57 2e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 2e-08
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 49 4e-06
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 40 0.001
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.073
SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5) 34 0.13
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 0.68
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.68
SB_15263| Best HMM Match : Jun (HMM E-Value=1.8) 31 0.90
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_27518| Best HMM Match : RWD (HMM E-Value=0.015) 30 1.6
SB_37909| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07) 29 3.6
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_12126| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 333 bits (819), Expect = 7e-92
Identities = 153/158 (96%), Positives = 158/158 (100%)
Frame = +2
Query: 71 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 250
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 251 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 430
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 431 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 544
TQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSG+
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 158
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 619 GRDLTDYLMKILTERGYSFTTTXEREI 699
GRDLTDYLMKILTERGYSFTTT EREI
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREI 209
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +3
Query: 543 NGVSHTVPIYEGYALPHAILRLDLA 617
+GV+HTVPIYEGYALPHAILRLDLA
Sbjct: 158 DGVTHTVPIYEGYALPHAILRLDLA 182
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 329 bits (808), Expect = 1e-90
Identities = 152/158 (96%), Positives = 157/158 (99%)
Frame = +2
Query: 71 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 250
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 251 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 430
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 431 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 544
TQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSG+
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 158
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 619 GRDLTDYLMKILTERGYSFTTTXEREI 699
GRDLTDYLMKILTERGYSFTTT EREI
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREI 209
Score = 52.8 bits (121), Expect = 3e-07
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +3
Query: 543 NGVSHTVPIYEGYALPHAILRLDLA 617
+GV+HTVPIYEGYALPHAI+RLDLA
Sbjct: 158 DGVTHTVPIYEGYALPHAIIRLDLA 182
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 329 bits (808), Expect = 1e-90
Identities = 150/158 (94%), Positives = 157/158 (99%)
Frame = +2
Query: 71 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 250
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 251 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 430
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 431 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 544
TQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSG+
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 158
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +1
Query: 625 DLTDYLMKILTERGYSFTTTXEREI 699
D + + I ERGYSFTTT EREI
Sbjct: 158 DGVSHTVPIYEERGYSFTTTAEREI 182
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 327 bits (804), Expect = 4e-90
Identities = 151/156 (96%), Positives = 156/156 (100%)
Frame = +2
Query: 77 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 256
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 257 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 436
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 437 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 544
IMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSG+
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 157
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 619 GRDLTDYLMKILTERGYSFTTTXEREI 699
GRDLTDYLMKILTERGYSFTTT EREI
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREI 208
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +3
Query: 543 NGVSHTVPIYEGYALPHAILRLDLA 617
+GV+HTVPIYEGYALPHAILRLDLA
Sbjct: 157 DGVTHTVPIYEGYALPHAILRLDLA 181
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 326 bits (801), Expect = 1e-89
Identities = 150/156 (96%), Positives = 156/156 (100%)
Frame = +2
Query: 77 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 256
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 257 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 436
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 437 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 544
IMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSG+
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 157
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 619 GRDLTDYLMKILTERGYSFTTTXEREI 699
GRDLTDYLMKILTERGYSFTTT EREI
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREI 208
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +3
Query: 543 NGVSHTVPIYEGYALPHAILRLDLA 617
+GV+HTVPIYEGYALPHAILRLDLA
Sbjct: 157 DGVTHTVPIYEGYALPHAILRLDLA 181
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 183 bits (445), Expect = 1e-46
Identities = 83/89 (93%), Positives = 86/89 (96%)
Frame = +2
Query: 77 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 256
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 257 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 343
RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 75.4 bits (177), Expect = 4e-14
Identities = 35/43 (81%), Positives = 40/43 (93%)
Frame = +2
Query: 416 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 544
N + M +IMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSG+
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 120
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 619 GRDLTDYLMKILTERGYSFTTTXEREI 699
GRDLTDYLMKILTERGYSFTTT EREI
Sbjct: 145 GRDLTDYLMKILTERGYSFTTTAEREI 171
Score = 52.8 bits (121), Expect = 3e-07
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = +3
Query: 543 NGVSHTVPIYEGYALPHAILRLDLA 617
+GV+HTVPIYEGYALPHAI+RLDLA
Sbjct: 120 DGVTHTVPIYEGYALPHAIIRLDLA 144
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 160 bits (388), Expect = 1e-39
Identities = 75/155 (48%), Positives = 105/155 (67%), Gaps = 3/155 (1%)
Frame = +2
Query: 89 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 262
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 263 ILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 439
+L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 440 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 544
MFE + +Y+AIQAVL+LYA G TG+V+DSG+
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGD 161
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +3
Query: 543 NGVSHTVPIYEGYALPHAILRLDLA 617
+GV+H P+YEG+ALPH RLD+A
Sbjct: 161 DGVTHICPVYEGFALPHLTRRLDIA 185
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 619 GRDLTDYLMKILTERGYSFTTTXERE 696
GRD+T YL+K++ RGY+F T + E
Sbjct: 186 GRDITKYLIKLMLLRGYAFNHTADFE 211
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 111 bits (267), Expect = 5e-25
Identities = 50/74 (67%), Positives = 61/74 (82%)
Frame = +2
Query: 323 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 502
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 503 ASGRTTGIVLDSGE 544
ASGRTTG V D G+
Sbjct: 2189 ASGRTTGTVFDCGD 2202
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 95 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 196
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 45.2 bits (102), Expect = 5e-05
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +3
Query: 543 NGVSHTVPIYEGYALPHAILRLDLA 617
+GVSHTVP+Y+GY LPHA R+DLA
Sbjct: 2202 DGVSHTVPVYDGYWLPHATQRIDLA 2226
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/27 (62%), Positives = 23/27 (85%)
Frame = +1
Query: 619 GRDLTDYLMKILTERGYSFTTTXEREI 699
GRDLT YL +++TERGYSF +T E++I
Sbjct: 2227 GRDLTHYLQRLVTERGYSFQSTAEQQI 2253
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 97.5 bits (232), Expect = 9e-21
Identities = 40/58 (68%), Positives = 53/58 (91%)
Frame = +2
Query: 371 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 544
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD+G+
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGD 183
Score = 46.0 bits (104), Expect = 3e-05
Identities = 17/25 (68%), Positives = 24/25 (96%)
Frame = +3
Query: 543 NGVSHTVPIYEGYALPHAILRLDLA 617
+GVSH+VPIYEG+A+PH+I+R D+A
Sbjct: 183 DGVSHSVPIYEGFAMPHSIMRTDIA 207
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 83.8 bits (198), Expect = 1e-16
Identities = 34/87 (39%), Positives = 59/87 (67%)
Frame = +2
Query: 281 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 460
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 461 PAMYVAIQAVLSLYASGRTTGIVLDSG 541
PA ++ +VL+ +A+GR+ G+V+DSG
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSG 89
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +2
Query: 437 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGE 544
IMFE FN+PA+YVAIQAVLSLYASGRTTG+V DSG+
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGD 36
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +1
Query: 619 GRDLTDYLMKILTERGYSFTTTXEREI 699
GRDLTDYLMK++TERGYSFTTT EREI
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTTAEREI 87
Score = 52.8 bits (121), Expect = 3e-07
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +3
Query: 543 NGVSHTVPIYEGYALPHAILRLDLA 617
+GVSH VPIYEGYALPHAILRLDLA
Sbjct: 36 DGVSHNVPIYEGYALPHAILRLDLA 60
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 80 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 196
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +2
Query: 65 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 235
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 236 GDEAQSKRGILTL 274
GD A +K G++ L
Sbjct: 753 GDAAVAKSGVMHL 765
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 482 QAVLSLYASGRTTGIVLDSGERC 550
Q LSLYASG T G+ L SG C
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSC 789
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +2
Query: 209 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 388
G+ D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +2
Query: 83 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 262
++A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKD 283
Query: 263 ILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 352
L Y P + G + NWD ++IW +TF E
Sbjct: 284 YSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +2
Query: 326 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 505
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 506 SGRTTGIV 529
+GIV
Sbjct: 572 YSAVSGIV 579
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 34.7 bits (76), Expect = 0.073
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -1
Query: 193 MAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFV 77
MA + D G++ + SI+S E GLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5)
Length = 491
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = -3
Query: 611 VQTQDGVGECVSLVDGHGVGDTVRRSPARYRWYDRTRTARAR 486
V DGVG CV DG G D R P YDR R +R+R
Sbjct: 211 VDNDDGVGGCVDNDDGGGAADLQLRHPDP---YDRVRLSRSR 249
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 272 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 424
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 168 GNTARGASSPAKPALHIPEPLSTT 97
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 413 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 529
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 168 GNTARGASSPAKPALHIPEPLSTT 97
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)
Length = 315
Score = 31.1 bits (67), Expect = 0.90
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 453 STRPPCTSPSKPCSRCTRPVVPPVSCWTPANGVSHTV-PIYEGYALPHAILRLDLARS*P 629
+T T+P+K S T+PV+ P TPA + PI P I +D R+ P
Sbjct: 125 TTSTTATTPAKTTSATTKPVMTPT---TPAPMTLPPISPIDPPRTQPPPIFPIDPPRTQP 181
Query: 630 HRLPHEDPHRAR 665
+P DP R +
Sbjct: 182 PPIPPIDPPRTQ 193
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +1
Query: 373 TPRPAY*GSPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRTVS 552
+PR SP+ + ++ P R + RR S + R R Y RR S
Sbjct: 853 SPRDRRRRSPEHRRRREASPPRRDRKRYDSPPRRRRRSPSPPPRRRRRDSYSPSRRRRDS 912
Query: 553 PTPCPSTRDTH-SPTPS 600
PTP P R SP+PS
Sbjct: 913 PTPSPPPRRRRKSPSPS 929
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 168 GNTARGASSPAKPALHIPEPLSTT 97
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 397 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 489
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 462 PPCTSPSKPCSRCTRPVVPPVSCWTPANGVSH 557
PP P P T P +PP SC G S+
Sbjct: 973 PPLPPPPPPVQTTTAPTLPPASCMPTHEGTSN 1004
>SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)
Length = 277
Score = 30.3 bits (65), Expect = 1.6
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 477 PSKPCSRCTRPVVPP 521
P++PCS CT+P +PP
Sbjct: 220 PTEPCSLCTKPALPP 234
>SB_37909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 478 HPSRALAVRVRSYHRYRAGLRRTVSPTPCPSTRDTHSPTPSCVWT 612
HP+R L R + + + A R+T PC DT P+ C WT
Sbjct: 33 HPTR-LETRTKESNIHLA--RKTSRDYPCAYAHDTDQPSDLCQWT 74
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = -1
Query: 169 GKHCARSIISCEAGLAHTGAIVYYQRGNFFVAHLELVKLVRCRCD 35
G+HC + I C G GA GN+ E C D
Sbjct: 724 GRHCEKDIDECSLGYCKNGATCTNTPGNYSCQCTEFTNGTNCELD 768
>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
Length = 807
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 376 PRPAY*GSPQPQGQ---QREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHR 522
PR A +P+PQ + Q +PDHVR + V SR+ V R+Y R
Sbjct: 704 PRDATTHTPEPQQEPEVQSHMEPDHVRYMLERMSVNYPTSRSSFVDPRTYPR 755
>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = -2
Query: 678 SERVAALGEDLHEVVCEVTTGPSPDAGWRGGVRI-----PRRWARCGR 550
++ + L + E+VCE T P P+ W G R+ P R A GR
Sbjct: 684 NKTIIVLENNTVELVCETTGSPPPNITWTKGYRVIGTGSPLRLAGVGR 731
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 401 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 529
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 168 GNTARGASSPAKPALHIPEPLSTT 97
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 168 GNTARGASSPAKPALHIPEPLSTT 97
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +2
Query: 539 GERCLPHRAHLRG-IRTPPRHPA 604
G+ PHR HL+G R PP +PA
Sbjct: 77 GDPAYPHRIHLQGPFREPPLNPA 99
>SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -3
Query: 260 LFCSVPHLLHKSPSVPYR---PSRPDGGAFPRSRETLREEHHLLRSRPCTYRS 111
LF + P L SVP P+R + G P S LR + LLR + TY +
Sbjct: 213 LFSAQPESLGPVVSVPEANAVPARVETGGTPASSPNLRVDQILLRLKMLTYNT 265
>SB_12126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 459 RPPCTSPSKPCSRCTRPVVPPVSC-WTP-ANGVSHTVPIY 572
R P +PS+ C R R VV V W+P V H+ P Y
Sbjct: 46 REPRETPSQECLRLRRLVVMSVLLWWSPTCESVGHSFPYY 85
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 245 PHLLHKSPSVPYRPSRPDGGAFPRSRETLREEHHLLRSRPCTYRSHCLLPTRQLLRR 75
P L +P + RPS + S + LL RP TYR+ LP+ LL +
Sbjct: 131 PLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTK 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,711,810
Number of Sequences: 59808
Number of extensions: 672308
Number of successful extensions: 2548
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 2166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2529
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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