BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-1077 (696 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 36 0.006 SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 35 0.010 SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 34 0.022 SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 34 0.022 SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 31 0.12 SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 31 0.21 SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 30 0.28 SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 30 0.28 SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.36 SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.64 SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 29 0.64 SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 29 0.84 SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 28 1.1 SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 28 1.5 SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 27 1.9 SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 1.9 SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 3.4 SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 3.4 SPBC1709.09 |||mitochondrial translation termination factor|Schi... 26 4.5 SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 26 4.5 SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 4.5 SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 26 4.5 SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 26 5.9 SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc... 26 5.9 SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 26 5.9 SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 26 5.9 SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 7.8 SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 7.8 SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 25 7.8 >SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 642 Score = 35.9 bits (79), Expect = 0.006 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%) Frame = +2 Query: 164 IEHHTKEFHKTLEQQFNSLTKSKDAQDF---SKAWKDGSESVLQQLNAFAKSLQGALGDA 334 I+ K LEQ+ +L ++++A++ ++ + D S S +L A AK A DA Sbjct: 98 IQPDEKTLQDLLEQRQVALREAREAEEELQRARQYNDRSTSEALELEARAKK---AAQDA 154 Query: 335 NGKAKEALEQSRQNIERTAEELRK-AHPDVEKNATALRE 448 A E +++ +IER+A K A + E+ ATALRE Sbjct: 155 E-LASERAREAQSSIERSASLREKQAREEAERAATALRE 192 >SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces pombe|chr 3|||Manual Length = 238 Score = 35.1 bits (77), Expect = 0.010 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Frame = +2 Query: 194 TLEQQFNSLTKSKDAQD---FSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQ 364 T+E ++SL KSK + F + ++ + +L N + + L + +A KA+++LEQ Sbjct: 8 TIELDYDSL-KSKISNFNSIFDRFLQEERKKLLNNKNEYLRQLS-EINEAQKKAEKSLEQ 65 Query: 365 SRQNIERTAEELRKAHPD---VEKNATALREKLQAAVQNTVQESQKL 496 + + E L K H + E+ + +EKL A ++ + S++L Sbjct: 66 TEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEEL 112 >SPCC162.08c |nup211||nuclear pore complex associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1837 Score = 33.9 bits (74), Expect = 0.022 Identities = 32/125 (25%), Positives = 57/125 (45%) Frame = +2 Query: 239 QDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPD 418 ++++ WK +SVL N + + L + K EALE+ +Q +E +E K Sbjct: 1329 KEYNSRWKLRFQSVL---NKYERVDPTQLEELK-KNCEALEKEKQELETKLQETAKETDT 1384 Query: 419 VEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVI 598 ++ +L E+ V+N +E ++ K + NEK K++ FA QE+ Sbjct: 1385 FKQQVNSLNEE----VENLKKEVEQANTKNTRLAAAWNEKCENLKKSSLTRFAHLKQELT 1440 Query: 599 KKIQE 613 K +E Sbjct: 1441 NKNKE 1445 >SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces pombe|chr 1|||Manual Length = 1957 Score = 33.9 bits (74), Expect = 0.022 Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 9/165 (5%) Frame = +2 Query: 188 HKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANG---KAKEAL 358 H+T+ +Q + +A + ES L N ++ L ++N K +E + Sbjct: 625 HQTITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDV 684 Query: 359 EQSRQNIERTAEELRKAHPDV---EKNATALREKLQ--AAVQNTVQESQKLAKKVSSNVQ 523 + +NI+ E+LRK+ + + A LRE + T++ + S+ + Sbjct: 685 DSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHETLEAQRNDLHSSLSDAK 744 Query: 524 ETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAANAKQ-*ASILNSH 655 TN L+ ++ + +D + T V Q++ KQ S++NS+ Sbjct: 745 NTNAILSSELTKSSEDVKRLTANVETLTQDSKAMKQSFTSLVNSY 789 >SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizosaccharomyces pombe|chr 1|||Manual Length = 899 Score = 31.5 bits (68), Expect = 0.12 Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 3/161 (1%) Frame = +2 Query: 134 RRDAPDFFKDIEHHTKEFHKTLEQQFNSLT---KSKDAQDFSKAWKDGSESVLQQLNAFA 304 ++ DFFK + ++ H TL ++ NSL+ +K + G + +LN Sbjct: 56 KKSEQDFFKMLSSRDRDAHSTLRKRSNSLSSFLSTKSTSASENKFHGGLNWLSLKLNLLL 115 Query: 305 KSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQE 484 + LQG + A S + E V +N + R+ L V ++Q Sbjct: 116 R-LQGRMNSAR------TNTSMNPYSCDSNENLSTLSSVNQNFNS-RQLLATIVPESIQN 167 Query: 485 SQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKI 607 L + V++ L P + Y KNT + KK+ Sbjct: 168 GCSLLRITKKKVRQRKVSLDP--ISGYLMLDKNTGKAYKKL 206 >SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 412 Score = 30.7 bits (66), Expect = 0.21 Identities = 30/131 (22%), Positives = 53/131 (40%) Frame = +2 Query: 47 PHSVSRQYIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTK 226 P S S + A + L + V R F + +EH+ K+LE+Q + L + Sbjct: 171 PSSSSCNLVNANSLDIYLNINNLKKSKSVPRLRGQFMEPVEHN-HPLSKSLEEQSSFLEQ 229 Query: 227 SKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRK 406 SKDA A S+ + S + +L N K++ +L+ ++ R Sbjct: 230 SKDASSNLTACNRSGSSLSSNFYSSRLSKKTSLASLN-KSRASLQHKIMSLSRNIIRRVF 288 Query: 407 AHPDVEKNATA 439 P+V + +A Sbjct: 289 HKPEVHLDPSA 299 >SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 633 Score = 30.3 bits (65), Expect = 0.28 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%) Frame = +2 Query: 341 KAKEALE---QSRQNIERTAEELRKAHPDVEKNATALREKLQAAV-----QNTVQESQKL 496 K KE +E Q ++ +ER E LRK D K+ + +AA+ + + E QKL Sbjct: 128 KEKEEMEGSLQGKEKLEREVENLRK-ELDKYKDLVETEAEKRAAITKEECEKSWLEQQKL 186 Query: 497 AKKVSSNVQETNEKLAPKIK 556 K + T +KL KI+ Sbjct: 187 YKDMEQENASTIQKLTSKIR 206 >SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 419 Score = 30.3 bits (65), Expect = 0.28 Identities = 17/81 (20%), Positives = 38/81 (46%) Frame = +2 Query: 293 NAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQN 472 N + ++ AL + KA + LE+ ++ E + EE+ H + T+ + + + Sbjct: 337 NLVSLAIYEALYEKFLKACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEK 396 Query: 473 TVQESQKLAKKVSSNVQETNE 535 +QE ++ K + Q+ +E Sbjct: 397 IIQEKSRVDKMIDEYRQKLSE 417 >SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 168 Score = 29.9 bits (64), Expect = 0.36 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = +2 Query: 260 KDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 397 KDG+++ +LN FAK L + + +A + + IE+++ E Sbjct: 111 KDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSE 156 >SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1115 Score = 29.1 bits (62), Expect = 0.64 Identities = 21/88 (23%), Positives = 46/88 (52%) Frame = +2 Query: 356 LEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNE 535 ++ Q+IE T L K D+E++ +++ + V + Q+ ++++ +Q+T E Sbjct: 496 MKTQEQSIELT--RLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKE 553 Query: 536 KLAPKIKAAYDDFAKNTQEVIKKIQEAA 619 L+ K + DD+ +EV+ K++ A Sbjct: 554 VLSKSSKES-DDY----EEVVGKLRTEA 576 >SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |Schizosaccharomyces pombe|chr 2|||Manual Length = 272 Score = 29.1 bits (62), Expect = 0.64 Identities = 17/69 (24%), Positives = 38/69 (55%) Frame = +2 Query: 341 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 520 K+++ LE S Q +E E + P+V++ +EK ++ V+ +E +K+S N+ Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-----EKISRNL 185 Query: 521 QETNEKLAP 547 + ++ ++P Sbjct: 186 RSSSRSISP 194 >SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schizosaccharomyces pombe|chr 2|||Manual Length = 501 Score = 28.7 bits (61), Expect = 0.84 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = +2 Query: 239 QDFSKAWKDGSESVLQQLNAFAKSLQGALGD-ANGKAKEALEQSR-QNIERTAE 394 +D + A+ + SVLQ+L+ + +QG LG N AL Q + QN++ E Sbjct: 79 EDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQE 132 >SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pombe|chr 2|||Manual Length = 175 Score = 28.3 bits (60), Expect = 1.1 Identities = 24/88 (27%), Positives = 45/88 (51%) Frame = +2 Query: 164 IEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGK 343 IE K F K ++ NS K+ +A F +G++ ++ + A ++L L + Sbjct: 73 IESSMKSF-KPVKIDLNSQLKAINA--FEAKASEGAKKNVELVKAELQNLSATLKN---- 125 Query: 344 AKEALEQSRQNIERTAEELRKAHPDVEK 427 +EQ+R E T E++++A P++EK Sbjct: 126 ----IEQARPTEEITIEDMKQAVPEIEK 149 >SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosaccharomyces pombe|chr 2|||Manual Length = 803 Score = 27.9 bits (59), Expect = 1.5 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 6/74 (8%) Frame = +2 Query: 194 TLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGA------LGDANGKAKEA 355 T++ + SL K D + ++ ES L L L A L D+ KAK Sbjct: 354 TIQIELESLRKETDTTSVER--REKLESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKTE 411 Query: 356 LEQSRQNIERTAEE 397 LEQ+R +ERT E Sbjct: 412 LEQARIELERTQRE 425 >SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 631 Score = 27.5 bits (58), Expect = 1.9 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -2 Query: 371 ASTVPKPPWPCRSRLRALPG 312 AST+ K PWP + L +PG Sbjct: 38 ASTLEKEPWPASTALLVMPG 57 >SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1288 Score = 27.5 bits (58), Expect = 1.9 Identities = 27/108 (25%), Positives = 48/108 (44%) Frame = +2 Query: 269 SESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALRE 448 S + + A K L GA KAKE ++ R +RTA E+RK +E+ R Sbjct: 143 SRRISGMILAHFKRLSGA---DEKKAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRA 199 Query: 449 KLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQE 592 + A Q + Q +++ ++ + + L +I+ A + + T E Sbjct: 200 ERAAEAQRVAGKEQ-----LANILKHSTDLLEARIERANINISAQTSE 242 >SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces pombe|chr 2|||Manual Length = 1485 Score = 26.6 bits (56), Expect = 3.4 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Frame = +2 Query: 140 DAPDFFKDIEHHTKEFHKTLEQ--QFNSLTKSKDAQDFSKAW 259 D +F D++ H K FH E+ + + +K D K W Sbjct: 665 DMKSYFSDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEW 706 >SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces pombe|chr 1|||Manual Length = 670 Score = 26.6 bits (56), Expect = 3.4 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Frame = +2 Query: 308 SLQGALGDANGKAKEALEQSRQNIE-----RTAEELRKAHPDVEKNATALREKLQAA 463 S++ L + N + KE +E + RT +E EKN LRE+L+ A Sbjct: 520 SMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKTA 576 >SPBC1709.09 |||mitochondrial translation termination factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 244 Score = 26.2 bits (55), Expect = 4.5 Identities = 18/71 (25%), Positives = 35/71 (49%) Frame = +2 Query: 371 QNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPK 550 +NI + E+ R + NA+ + K Q + T++ Q+LAK + +++ E+L+ Sbjct: 136 KNILKAIEDSRYPFVANKLNASTIEVKPQ---RTTLESRQQLAKVLEGYAKDSREQLSAM 192 Query: 551 IKAAYDDFAKN 583 + AKN Sbjct: 193 RTELKKEIAKN 203 >SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 172 Score = 26.2 bits (55), Expect = 4.5 Identities = 13/86 (15%), Positives = 41/86 (47%) Frame = +2 Query: 347 KEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQE 526 K ++R+N++ + + P+++ + + +L+ +++++ Q + + V+E Sbjct: 81 KRRNRKARENLKVNVSSIGEVLPEIDLDISVANSRLKPVIKDSLSSKQTKSSMKRNTVEE 140 Query: 527 TNEKLAPKIKAAYDDFAKNTQEVIKK 604 E+ +K + F N E +++ Sbjct: 141 I-ERFQAILK--HPSFVSNPLETVRE 163 >SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1727 Score = 26.2 bits (55), Expect = 4.5 Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 1/148 (0%) Frame = +2 Query: 164 IEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGK 343 I + KE TL +Q +L ++ K +ES+L + N + L + Sbjct: 574 ISNAVKENSNTLSEQIKNLESELNSS------KIKNESLLNERNLLKEMLATSRSSILSH 627 Query: 344 AKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQ 523 S NI+ + + ++ ++EKN R ++ A ++ + +Q L ++ + + Sbjct: 628 -----NSSAGNIDDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRK 682 Query: 524 E-TNEKLAPKIKAAYDDFAKNTQEVIKK 604 E N K ++ A N E KK Sbjct: 683 ELENSKYQQQLSTDRLTNANNDVEAFKK 710 >SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation factor eIF2 beta subunit|Schizosaccharomyces pombe|chr 1|||Manual Length = 321 Score = 26.2 bits (55), Expect = 4.5 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = +2 Query: 176 TKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQ-GALGDA 334 +K+ + E+Q +T DFS K + L+AF K L+ + GDA Sbjct: 89 SKKSSASAEEQTEDITTESGELDFSSMKKKKKKKKSADLSAFEKELEASSTGDA 142 >SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces pombe|chr 2|||Manual Length = 512 Score = 25.8 bits (54), Expect = 5.9 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%) Frame = +2 Query: 503 KVSSNVQET--NEKLAPKIKAAYD 568 +V N++ET EK A K+KA+YD Sbjct: 299 EVDLNIEETVLKEKYADKVKASYD 322 >SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosaccharomyces pombe|chr 1|||Manual Length = 188 Score = 25.8 bits (54), Expect = 5.9 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Frame = +2 Query: 347 KEALEQSRQNIERTAEELRKAHPD--VEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 520 ++ L + R NI ++ + K+ D + N L+ A+ + V+E ++ Sbjct: 53 QKRLAKLRANIHLESQVIGKSRIDRMLATNVEKLQTVSHASTLHDVEEFYTSHSAKPLDI 112 Query: 521 QETNEKLAPKIKAAY 565 E NE+L+ +++AY Sbjct: 113 SEINERLSEAVQSAY 127 >SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 394 Score = 25.8 bits (54), Expect = 5.9 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +2 Query: 104 CIALAQGAMVRRDAPDFFKDIEHHTKEFH-KTLEQQFNSLTKSKDAQDFSKAWKDGSESV 280 C + +G +RR P +++ I ++ KTL + FN+ + +++ + KA ++G V Sbjct: 13 CEYVFKGDGLRRVPPYYYEYITFAKLRWYGKTLLEVFNTEFRDRESGYYEKAIRNGQVKV 72 Query: 281 LQQL 292 Q+ Sbjct: 73 NNQI 76 >SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces pombe|chr 2|||Manual Length = 406 Score = 25.8 bits (54), Expect = 5.9 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 7/139 (5%) Frame = +2 Query: 218 LTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 397 + S D+++ S+ D ++ L+ +NA Q + K+ E L SRQ+ A+E Sbjct: 28 IASSSDSEEESEL--DTNKQALEHINA-----QKNITHNENKSAEPL--SRQSTILDADE 78 Query: 398 LRKAHPDVEKNATAL--REKLQAAVQNTVQE-----SQKLAKKVSSNVQETNEKLAPKIK 556 + D NA R ++A+ Q + + A + +N + L+ Sbjct: 79 GNQDVSDTTPNACLNEGRHSPKSAISCVTQPVSPVYNTRAAANLRNNSINSEAALSTTSS 138 Query: 557 AAYDDFAKNTQEVIKKIQE 613 DDFA+ +E+ +++QE Sbjct: 139 LLDDDFARRLEEIDRQVQE 157 >SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosaccharomyces pombe|chr 2|||Manual Length = 548 Score = 25.4 bits (53), Expect = 7.8 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +2 Query: 398 LRKAHPDVEKNATALREKLQAAVQNTVQE 484 L AH D+E T++RE+L++ + +E Sbjct: 267 LDSAHSDLELELTSIRERLESLILEKQEE 295 >SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Schizosaccharomyces pombe|chr 3|||Manual Length = 1108 Score = 25.4 bits (53), Expect = 7.8 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +2 Query: 335 NGKAKEALEQSRQNIERTAEELRKAHPDVEKN 430 N K KE E++ + EELR+A PD E++ Sbjct: 22 NEKLKEDFEENVSIDVKIHEELRRALPDYEES 53 >SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 222 Score = 25.4 bits (53), Expect = 7.8 Identities = 14/66 (21%), Positives = 33/66 (50%) Frame = +2 Query: 422 EKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIK 601 EK + +EK A ++QE + ++ SNV+ +N +L ++ + +++ + Sbjct: 83 EKKIKSKQEKEIAHALQSIQERELRERQQMSNVEASNAQLLTNQRSMQTEISESLLHLAS 142 Query: 602 KIQEAA 619 ++E A Sbjct: 143 VLKENA 148 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,062,623 Number of Sequences: 5004 Number of extensions: 35463 Number of successful extensions: 195 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 185 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 193 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 321151040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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