Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1077
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 36 0.006
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 35 0.010
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 34 0.022
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 34 0.022
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 31 0.12
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 31 0.21
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 30 0.28
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 30 0.28
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.36
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.64
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 29 0.64
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 29 0.84
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 28 1.1
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 28 1.5
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 27 1.9
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 1.9
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 3.4
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 3.4
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 26 4.5
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 26 4.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 4.5
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 26 4.5
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 26 5.9
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc... 26 5.9
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 26 5.9
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 26 5.9
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 7.8
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 7.8
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 25 7.8
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 35.9 bits (79), Expect = 0.006
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Frame = +2
Query: 164 IEHHTKEFHKTLEQQFNSLTKSKDAQDF---SKAWKDGSESVLQQLNAFAKSLQGALGDA 334
I+ K LEQ+ +L ++++A++ ++ + D S S +L A AK A DA
Sbjct: 98 IQPDEKTLQDLLEQRQVALREAREAEEELQRARQYNDRSTSEALELEARAKK---AAQDA 154
Query: 335 NGKAKEALEQSRQNIERTAEELRK-AHPDVEKNATALRE 448
A E +++ +IER+A K A + E+ ATALRE
Sbjct: 155 E-LASERAREAQSSIERSASLREKQAREEAERAATALRE 192
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 35.1 bits (77), Expect = 0.010
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Frame = +2
Query: 194 TLEQQFNSLTKSKDAQD---FSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQ 364
T+E ++SL KSK + F + ++ + +L N + + L + +A KA+++LEQ
Sbjct: 8 TIELDYDSL-KSKISNFNSIFDRFLQEERKKLLNNKNEYLRQLS-EINEAQKKAEKSLEQ 65
Query: 365 SRQNIERTAEELRKAHPD---VEKNATALREKLQAAVQNTVQESQKL 496
+ + E L K H + E+ + +EKL A ++ + S++L
Sbjct: 66 TEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEEL 112
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 33.9 bits (74), Expect = 0.022
Identities = 32/125 (25%), Positives = 57/125 (45%)
Frame = +2
Query: 239 QDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPD 418
++++ WK +SVL N + + L + K EALE+ +Q +E +E K
Sbjct: 1329 KEYNSRWKLRFQSVL---NKYERVDPTQLEELK-KNCEALEKEKQELETKLQETAKETDT 1384
Query: 419 VEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVI 598
++ +L E+ V+N +E ++ K + NEK K++ FA QE+
Sbjct: 1385 FKQQVNSLNEE----VENLKKEVEQANTKNTRLAAAWNEKCENLKKSSLTRFAHLKQELT 1440
Query: 599 KKIQE 613
K +E
Sbjct: 1441 NKNKE 1445
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 33.9 bits (74), Expect = 0.022
Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 9/165 (5%)
Frame = +2
Query: 188 HKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANG---KAKEAL 358
H+T+ +Q + +A + ES L N ++ L ++N K +E +
Sbjct: 625 HQTITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDV 684
Query: 359 EQSRQNIERTAEELRKAHPDV---EKNATALREKLQ--AAVQNTVQESQKLAKKVSSNVQ 523
+ +NI+ E+LRK+ + + A LRE + T++ + S+ +
Sbjct: 685 DSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHETLEAQRNDLHSSLSDAK 744
Query: 524 ETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAANAKQ-*ASILNSH 655
TN L+ ++ + +D + T V Q++ KQ S++NS+
Sbjct: 745 NTNAILSSELTKSSEDVKRLTANVETLTQDSKAMKQSFTSLVNSY 789
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 31.5 bits (68), Expect = 0.12
Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 3/161 (1%)
Frame = +2
Query: 134 RRDAPDFFKDIEHHTKEFHKTLEQQFNSLT---KSKDAQDFSKAWKDGSESVLQQLNAFA 304
++ DFFK + ++ H TL ++ NSL+ +K + G + +LN
Sbjct: 56 KKSEQDFFKMLSSRDRDAHSTLRKRSNSLSSFLSTKSTSASENKFHGGLNWLSLKLNLLL 115
Query: 305 KSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQE 484
+ LQG + A S + E V +N + R+ L V ++Q
Sbjct: 116 R-LQGRMNSAR------TNTSMNPYSCDSNENLSTLSSVNQNFNS-RQLLATIVPESIQN 167
Query: 485 SQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKI 607
L + V++ L P + Y KNT + KK+
Sbjct: 168 GCSLLRITKKKVRQRKVSLDP--ISGYLMLDKNTGKAYKKL 206
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 30.7 bits (66), Expect = 0.21
Identities = 30/131 (22%), Positives = 53/131 (40%)
Frame = +2
Query: 47 PHSVSRQYIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTK 226
P S S + A + L + V R F + +EH+ K+LE+Q + L +
Sbjct: 171 PSSSSCNLVNANSLDIYLNINNLKKSKSVPRLRGQFMEPVEHN-HPLSKSLEEQSSFLEQ 229
Query: 227 SKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRK 406
SKDA A S+ + S + +L N K++ +L+ ++ R
Sbjct: 230 SKDASSNLTACNRSGSSLSSNFYSSRLSKKTSLASLN-KSRASLQHKIMSLSRNIIRRVF 288
Query: 407 AHPDVEKNATA 439
P+V + +A
Sbjct: 289 HKPEVHLDPSA 299
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 30.3 bits (65), Expect = 0.28
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = +2
Query: 341 KAKEALE---QSRQNIERTAEELRKAHPDVEKNATALREKLQAAV-----QNTVQESQKL 496
K KE +E Q ++ +ER E LRK D K+ + +AA+ + + E QKL
Sbjct: 128 KEKEEMEGSLQGKEKLEREVENLRK-ELDKYKDLVETEAEKRAAITKEECEKSWLEQQKL 186
Query: 497 AKKVSSNVQETNEKLAPKIK 556
K + T +KL KI+
Sbjct: 187 YKDMEQENASTIQKLTSKIR 206
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 30.3 bits (65), Expect = 0.28
Identities = 17/81 (20%), Positives = 38/81 (46%)
Frame = +2
Query: 293 NAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQN 472
N + ++ AL + KA + LE+ ++ E + EE+ H + T+ + + +
Sbjct: 337 NLVSLAIYEALYEKFLKACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEK 396
Query: 473 TVQESQKLAKKVSSNVQETNE 535
+QE ++ K + Q+ +E
Sbjct: 397 IIQEKSRVDKMIDEYRQKLSE 417
>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 168
Score = 29.9 bits (64), Expect = 0.36
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 260 KDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 397
KDG+++ +LN FAK L + + +A + + IE+++ E
Sbjct: 111 KDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSE 156
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.1 bits (62), Expect = 0.64
Identities = 21/88 (23%), Positives = 46/88 (52%)
Frame = +2
Query: 356 LEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNE 535
++ Q+IE T L K D+E++ +++ + V + Q+ ++++ +Q+T E
Sbjct: 496 MKTQEQSIELT--RLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKE 553
Query: 536 KLAPKIKAAYDDFAKNTQEVIKKIQEAA 619
L+ K + DD+ +EV+ K++ A
Sbjct: 554 VLSKSSKES-DDY----EEVVGKLRTEA 576
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/69 (24%), Positives = 38/69 (55%)
Frame = +2
Query: 341 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 520
K+++ LE S Q +E E + P+V++ +EK ++ V+ +E +K+S N+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-----EKISRNL 185
Query: 521 QETNEKLAP 547
+ ++ ++P
Sbjct: 186 RSSSRSISP 194
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 28.7 bits (61), Expect = 0.84
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 239 QDFSKAWKDGSESVLQQLNAFAKSLQGALGD-ANGKAKEALEQSR-QNIERTAE 394
+D + A+ + SVLQ+L+ + +QG LG N AL Q + QN++ E
Sbjct: 79 EDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQE 132
>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/88 (27%), Positives = 45/88 (51%)
Frame = +2
Query: 164 IEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGK 343
IE K F K ++ NS K+ +A F +G++ ++ + A ++L L +
Sbjct: 73 IESSMKSF-KPVKIDLNSQLKAINA--FEAKASEGAKKNVELVKAELQNLSATLKN---- 125
Query: 344 AKEALEQSRQNIERTAEELRKAHPDVEK 427
+EQ+R E T E++++A P++EK
Sbjct: 126 ----IEQARPTEEITIEDMKQAVPEIEK 149
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +2
Query: 194 TLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGA------LGDANGKAKEA 355
T++ + SL K D + ++ ES L L L A L D+ KAK
Sbjct: 354 TIQIELESLRKETDTTSVER--REKLESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKTE 411
Query: 356 LEQSRQNIERTAEE 397
LEQ+R +ERT E
Sbjct: 412 LEQARIELERTQRE 425
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 371 ASTVPKPPWPCRSRLRALPG 312
AST+ K PWP + L +PG
Sbjct: 38 ASTLEKEPWPASTALLVMPG 57
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.5 bits (58), Expect = 1.9
Identities = 27/108 (25%), Positives = 48/108 (44%)
Frame = +2
Query: 269 SESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALRE 448
S + + A K L GA KAKE ++ R +RTA E+RK +E+ R
Sbjct: 143 SRRISGMILAHFKRLSGA---DEKKAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRA 199
Query: 449 KLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQE 592
+ A Q + Q +++ ++ + + L +I+ A + + T E
Sbjct: 200 ERAAEAQRVAGKEQ-----LANILKHSTDLLEARIERANINISAQTSE 242
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 140 DAPDFFKDIEHHTKEFHKTLEQ--QFNSLTKSKDAQDFSKAW 259
D +F D++ H K FH E+ + + +K D K W
Sbjct: 665 DMKSYFSDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEW 706
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +2
Query: 308 SLQGALGDANGKAKEALEQSRQNIE-----RTAEELRKAHPDVEKNATALREKLQAA 463
S++ L + N + KE +E + RT +E EKN LRE+L+ A
Sbjct: 520 SMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKTA 576
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +2
Query: 371 QNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPK 550
+NI + E+ R + NA+ + K Q + T++ Q+LAK + +++ E+L+
Sbjct: 136 KNILKAIEDSRYPFVANKLNASTIEVKPQ---RTTLESRQQLAKVLEGYAKDSREQLSAM 192
Query: 551 IKAAYDDFAKN 583
+ AKN
Sbjct: 193 RTELKKEIAKN 203
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/86 (15%), Positives = 41/86 (47%)
Frame = +2
Query: 347 KEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQE 526
K ++R+N++ + + P+++ + + +L+ +++++ Q + + V+E
Sbjct: 81 KRRNRKARENLKVNVSSIGEVLPEIDLDISVANSRLKPVIKDSLSSKQTKSSMKRNTVEE 140
Query: 527 TNEKLAPKIKAAYDDFAKNTQEVIKK 604
E+ +K + F N E +++
Sbjct: 141 I-ERFQAILK--HPSFVSNPLETVRE 163
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 4.5
Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 1/148 (0%)
Frame = +2
Query: 164 IEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGK 343
I + KE TL +Q +L ++ K +ES+L + N + L +
Sbjct: 574 ISNAVKENSNTLSEQIKNLESELNSS------KIKNESLLNERNLLKEMLATSRSSILSH 627
Query: 344 AKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQ 523
S NI+ + + ++ ++EKN R ++ A ++ + +Q L ++ + +
Sbjct: 628 -----NSSAGNIDDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRK 682
Query: 524 E-TNEKLAPKIKAAYDDFAKNTQEVIKK 604
E N K ++ A N E KK
Sbjct: 683 ELENSKYQQQLSTDRLTNANNDVEAFKK 710
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 176 TKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQ-GALGDA 334
+K+ + E+Q +T DFS K + L+AF K L+ + GDA
Sbjct: 89 SKKSSASAEEQTEDITTESGELDFSSMKKKKKKKKSADLSAFEKELEASSTGDA 142
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +2
Query: 503 KVSSNVQET--NEKLAPKIKAAYD 568
+V N++ET EK A K+KA+YD
Sbjct: 299 EVDLNIEETVLKEKYADKVKASYD 322
>SPAC23H4.11c |cnl2||centromere localized protein
Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 347 KEALEQSRQNIERTAEELRKAHPD--VEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 520
++ L + R NI ++ + K+ D + N L+ A+ + V+E ++
Sbjct: 53 QKRLAKLRANIHLESQVIGKSRIDRMLATNVEKLQTVSHASTLHDVEEFYTSHSAKPLDI 112
Query: 521 QETNEKLAPKIKAAY 565
E NE+L+ +++AY
Sbjct: 113 SEINERLSEAVQSAY 127
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 104 CIALAQGAMVRRDAPDFFKDIEHHTKEFH-KTLEQQFNSLTKSKDAQDFSKAWKDGSESV 280
C + +G +RR P +++ I ++ KTL + FN+ + +++ + KA ++G V
Sbjct: 13 CEYVFKGDGLRRVPPYYYEYITFAKLRWYGKTLLEVFNTEFRDRESGYYEKAIRNGQVKV 72
Query: 281 LQQL 292
Q+
Sbjct: 73 NNQI 76
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 5.9
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Frame = +2
Query: 218 LTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 397
+ S D+++ S+ D ++ L+ +NA Q + K+ E L SRQ+ A+E
Sbjct: 28 IASSSDSEEESEL--DTNKQALEHINA-----QKNITHNENKSAEPL--SRQSTILDADE 78
Query: 398 LRKAHPDVEKNATAL--REKLQAAVQNTVQE-----SQKLAKKVSSNVQETNEKLAPKIK 556
+ D NA R ++A+ Q + + A + +N + L+
Sbjct: 79 GNQDVSDTTPNACLNEGRHSPKSAISCVTQPVSPVYNTRAAANLRNNSINSEAALSTTSS 138
Query: 557 AAYDDFAKNTQEVIKKIQE 613
DDFA+ +E+ +++QE
Sbjct: 139 LLDDDFARRLEEIDRQVQE 157
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 398 LRKAHPDVEKNATALREKLQAAVQNTVQE 484
L AH D+E T++RE+L++ + +E
Sbjct: 267 LDSAHSDLELELTSIRERLESLILEKQEE 295
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 335 NGKAKEALEQSRQNIERTAEELRKAHPDVEKN 430
N K KE E++ + EELR+A PD E++
Sbjct: 22 NEKLKEDFEENVSIDVKIHEELRRALPDYEES 53
>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/66 (21%), Positives = 33/66 (50%)
Frame = +2
Query: 422 EKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIK 601
EK + +EK A ++QE + ++ SNV+ +N +L ++ + +++ +
Sbjct: 83 EKKIKSKQEKEIAHALQSIQERELRERQQMSNVEASNAQLLTNQRSMQTEISESLLHLAS 142
Query: 602 KIQEAA 619
++E A
Sbjct: 143 VLKENA 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,623
Number of Sequences: 5004
Number of extensions: 35463
Number of successful extensions: 195
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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