Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1076
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 28 1.2
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 27 2.2
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha... 27 2.9
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 26 6.6
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.6
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 25 8.7
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 8.7
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 25 8.7
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 8.7
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 25 8.7
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 28.3 bits (60), Expect = 1.2
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Frame = +2
Query: 269 PHYSKIIAKYETLICIVSSSVAQGQTLALC----DSNEQQ*TTGHL*RDKLNSFLN*F*L 436
P Y II+ + +L+ I+SSS+ + C E + L D L+
Sbjct: 461 PSYEDIISLWSSLMIIISSSLGSDEIYKACLLFLRKLEDVSSESVLLGDICGIVLHLLQR 520
Query: 437 KINRLWILFILYFKSAIDQLVVVFMYFA 520
K++RL+ L Y+K +D L+ VF + A
Sbjct: 521 KVSRLF-LDSSYYKPILDSLLGVFGFLA 547
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 122 KTNKNRNVKSIYN*CLLLECCQFH 193
K+N +RN S+ ++LE CQFH
Sbjct: 239 KSNNSRNPSSVNGGFVILEDCQFH 262
>SPAC19D5.02c |||peroxisomal membrane protein Pex22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 251 VHAQQTTSWGIASRPKYKISEIGNIPK 171
V+ T +W +A KYKI EI +PK
Sbjct: 69 VYEDSTNTW-LAGASKYKIDEIKTLPK 94
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 319 YNANECFIFSDNL*VVR*TMYLQSTLNRPH 230
+ N C +NL ++ +YL LNRPH
Sbjct: 82 FTNNRCLSDKENLENLQNLLYLHCDLNRPH 111
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -2
Query: 92 LPQIRESKRLMLVVCYWVRYYVENSAS 12
L +IR L ++ C W+ Y++ S +
Sbjct: 146 LSRIRRKLDLRIITCLWITYFLSRSVT 172
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 272 HYSKIIAKYETLICIVSSSVAQGQTLALC 358
H+SKII + +IC+ A QTL C
Sbjct: 120 HFSKIIFPAQKVICLYIFLFALNQTLQEC 148
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 718 SFSETNEQQFHFYIRIYIMYGFIS 647
S SE N + FY+ IY+ +GF+S
Sbjct: 934 SSSELNPSPY-FYLGIYLFFGFLS 956
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 272 HYSKIIAKYETLICIVSSSVAQGQTLALC 358
H+SKII + +IC+ A QTL C
Sbjct: 120 HFSKIIFPAQKVICLYIFLFALNQTLQEC 148
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 272 HYSKIIAKYETLICIVSSSVAQGQTLALC 358
H+SKII + +IC+ A QTL C
Sbjct: 92 HFSKIIFPAQKVICLYIFLFALNQTLQEC 120
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 272 HYSKIIAKYETLICIVSSSVAQGQTLALC 358
H+SKII + +IC+ A QTL C
Sbjct: 120 HFSKIIFPAQKVICLYIFLFALNQTLQEC 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,289
Number of Sequences: 5004
Number of extensions: 57602
Number of successful extensions: 110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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