Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1076
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58750-5|AAB00645.1|  299|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical...    28   6.2  

>U58750-5|AAB00645.1|  299|Caenorhabditis elegans Hypothetical
           protein F55G1.9 protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 257 PTVHAQQTTSWGIASRPKYKISEIGNIPKASISCK 153
           P V  +  +SW + SRP++ IS +  +P   ++ K
Sbjct: 87  PQVFEEVVSSWPVNSRPEFIISVMAGVPLKVLNAK 121


>AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical
           protein Y41C4A.11 protein.
          Length = 386

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 219 NAPRCGLLSVDCRYIVYRTTQRLSLN-MKHSFAL*AAVWHKDKPWPCATVMSNNRQQDTY 395
           N P CGLL          T+ R + N + HS  + +  +H +KPW    + + N Q   Y
Sbjct: 85  NCPNCGLLLA--------TSNRAAPNFVSHSDRVKSVDFHSEKPWILTALHTGNVQIWNY 136

Query: 396 D 398
           D
Sbjct: 137 D 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,089,980
Number of Sequences: 27780
Number of extensions: 317639
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)