Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1076
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              25   0.57 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   7.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.3  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 396 HKCPVVYCCSLLSHRAKVCPCAT 328
           + CP+   C  ++H  K CP  T
Sbjct: 73  YTCPICGACGDIAHTVKYCPKGT 95


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 413 YLVCHVISVLLSIVAHYCRT 354
           +L+C V    ++IV  YC+T
Sbjct: 281 FLICWVPFFCVNIVTSYCKT 300


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 548 FFVQPTYFHS 577
           +F++P YFHS
Sbjct: 454 YFIEPIYFHS 463


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 256 LQSTLNRPHRGALHHDLNIK*VKLATFQKQALV 158
           L+S  +  H G +H DL  + + LA+  K A V
Sbjct: 19  LESVHHCHHNGVVHRDLKPENLLLASKAKGAAV 51


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 692 ISFLYKNIYYVWIYF 648
           IS L   IYY+W +F
Sbjct: 104 ISGLPPEIYYIWSHF 118


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 62  MLVVCYWVRYYVENSA 15
           MLV+  WV ++++ SA
Sbjct: 254 MLVIVSWVSFWLDQSA 269


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 62  MLVVCYWVRYYVENSA 15
           MLV+  WV ++++ SA
Sbjct: 254 MLVIVSWVSFWLDQSA 269


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 582 HR*TCHKFHHNNRSRFLGINYSEINPYIIYIL 677
           H    +K+++NN+  +   NY++   Y  YI+
Sbjct: 91  HNNNNYKYNYNNKYNYNNNNYNKKLYYKNYII 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,261
Number of Sequences: 438
Number of extensions: 4314
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)