Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1075
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    38   0.001
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    38   0.001
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    26   5.0  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    26   5.0  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.7  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    25   8.7  
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf...    25   8.7  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +3

Query: 609 SPKKVGDDIAKATSDWEG 662
           SPKKVG+DIAKAT DW+G
Sbjct: 38  SPKKVGEDIAKATKDWKG 55



 Score = 31.1 bits (67), Expect = 0.18
 Identities = 12/16 (75%), Positives = 16/16 (100%)
 Frame = +1

Query: 658 KGLKITVQLTVQNRQA 705
           KGL++TV+LT+QNRQA
Sbjct: 54  KGLRVTVKLTIQNRQA 69


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +3

Query: 609 SPKKVGDDIAKATSDWEG 662
           SPKKVG+DIAKAT DW+G
Sbjct: 38  SPKKVGEDIAKATKDWKG 55



 Score = 31.1 bits (67), Expect = 0.18
 Identities = 12/16 (75%), Positives = 16/16 (100%)
 Frame = +1

Query: 658 KGLKITVQLTVQNRQA 705
           KGL++TV+LT+QNRQA
Sbjct: 54  KGLRVTVKLTIQNRQA 69


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 600 ASQSPKKVGDDIAKATSDWEGSQDHCAADSSKQTSP 707
           A+Q  +    D  +A  +W G  D   AD S+ T P
Sbjct: 480 ATQQTEGSDQDGEEAEEEWHGISDDGKADESESTKP 515


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 600 ASQSPKKVGDDIAKATSDWEGSQD 671
           AS + ++VGDD++K   DWE  QD
Sbjct: 712 ASNNNQRVGDDVSK---DWEIQQD 732


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 561 SKCFYSSPFNNIFASQSPKKVGDDIA 638
           S C+ S PF N +  Q+P +V ++I+
Sbjct: 678 SVCYPSMPFFNQYVPQNPNEVRENIS 703


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = -3

Query: 103 ATPYWAFGVAATGKLVRYPESRVPSIR--HPEGRAW 2
           A P W F +   G    YP+ ++P +    P G  W
Sbjct: 350 APPPWLFAMQRYGPPPSYPDLKIPGVNCPIPTGAQW 385


>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
           protein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 570 FYSSPFNNIFASQSPKKVGDDIAKATSDWEGSQDHCAAD 686
           F  S   ++ +S S K  G + A   +DW+   DH   D
Sbjct: 28  FGESKSTDLVSSTSEKIPGANPASYCADWDRGDDHVVVD 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,106
Number of Sequences: 5004
Number of extensions: 58455
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)