Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1075
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                         32   0.56 
02_05_0416 + 28791512-28792012                                         32   0.56 
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194...    28   9.1  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 13/19 (68%), Positives = 17/19 (89%), Gaps = 1/19 (5%)
 Frame = +3

Query: 609 SPKKVGDDIAKATS-DWEG 662
           SPKK+G+DIAK T+ DW+G
Sbjct: 38  SPKKIGEDIAKETAKDWKG 56



 Score = 31.9 bits (69), Expect = 0.56
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +1

Query: 658 KGLKITVQLTVQNRQAQ 708
           KGL++TV+LTVQNRQA+
Sbjct: 55  KGLRVTVKLTVQNRQAK 71


>02_05_0416 + 28791512-28792012
          Length = 166

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 13/19 (68%), Positives = 17/19 (89%), Gaps = 1/19 (5%)
 Frame = +3

Query: 609 SPKKVGDDIAKATS-DWEG 662
           SPKK+G+DIAK T+ DW+G
Sbjct: 38  SPKKIGEDIAKETAKDWKG 56



 Score = 31.9 bits (69), Expect = 0.56
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +1

Query: 658 KGLKITVQLTVQNRQAQ 708
           KGL++TV+LTVQNRQA+
Sbjct: 55  KGLRVTVKLTVQNRQAK 71


>04_03_1002 -
           21617339-21617362,21618476-21618565,21618755-21619432,
           21619536-21619772,21619849-21619896,21619995-21620045,
           21620301-21620426,21620557-21620697,21621165-21621401,
           21622467-21622571,21622812-21622982,21623306-21623380,
           21623754-21623936,21624151-21624297,21624365-21624472,
           21624605-21624709,21625109-21625213,21625322-21625381,
           21625512-21625579,21625876-21625954,21626208-21626267,
           21626445-21626498,21626834-21626886,21627405-21627494,
           21628265-21628362,21628464-21628852
          Length = 1193

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 104 RDSLLGIRSSRDRETGEVS*VAGSFHPPPGRT 9
           R S+   RS R    G  + VA + HPPP RT
Sbjct: 9   RASISPFRSRRTSAAGGGAGVAAAAHPPPART 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,092,502
Number of Sequences: 37544
Number of extensions: 366890
Number of successful extensions: 733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)