Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1075
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_11120| Best HMM Match : DUF1080 (HMM E-Value=0.082)                 29   3.0  
SB_33656| Best HMM Match : F5_F8_type_C (HMM E-Value=0.03)             28   9.3  

>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +3

Query: 609 SPKKVGDDIAKATSDWEG 662
           SPKKVGDDIAKAT DW+G
Sbjct: 38  SPKKVGDDIAKATQDWKG 55



 Score = 31.5 bits (68), Expect = 0.76
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +1

Query: 658 KGLKITVQLTVQNRQAQ 708
           KGLKITV LT+QNRQA+
Sbjct: 54  KGLKITVCLTIQNRQAK 70


>SB_11120| Best HMM Match : DUF1080 (HMM E-Value=0.082)
          Length = 748

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 39  RDSGYLTSFPVAATPNAQ*GVADQAYYHDIGYFRWLRL 152
           RD+ YL+S P   TP  + GV     Y ++ Y+R  RL
Sbjct: 526 RDNVYLSSVPTRFTPTPKGGVIVANGYQNVIYYRDFRL 563


>SB_33656| Best HMM Match : F5_F8_type_C (HMM E-Value=0.03)
          Length = 206

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 21  WRMEGTRDSGYLTSFPVAATPNAQ*GVADQAYYHDIGYFRWLRLENVSGE 170
           WR+EG+ D+   T+   A  P        +     IG F++ RL  V+ E
Sbjct: 141 WRIEGSTDNTNWTTLYTATNPTYLGNTYQEFLVDSIGKFQYYRLFCVNSE 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,062,224
Number of Sequences: 59808
Number of extensions: 428715
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)