Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1075
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L06505-1|AAA36157.1| 165|Homo sapiens ribosomal protein L12 pro... 40 0.010
BC105603-1|AAI05604.1| 165|Homo sapiens ribosomal protein L12 p... 40 0.010
BC094831-1|AAH94831.1| 165|Homo sapiens ribosomal protein L12 p... 40 0.010
BC050644-1|AAH50644.1| 165|Homo sapiens ribosomal protein L12 p... 40 0.010
AL445222-15|CAH72929.1| 165|Homo sapiens ribosomal protein L12 ... 40 0.010
AL021366-3|CAA16156.1| 165|Homo sapiens cICK0721Q.2 (60S Riboso... 40 0.010
AB209471-1|BAD92708.1| 197|Homo sapiens ribosomal protein L12 v... 40 0.010
BX088650-2|CAM26293.1| 203|Homo sapiens kinesin family member C... 33 0.83
AL662799-3|CAM25565.1| 203|Homo sapiens kinesin family member C... 33 0.83
BX248088-14|CAM25707.1| 203|Homo sapiens kinesin family member ... 31 4.4
>L06505-1|AAA36157.1| 165|Homo sapiens ribosomal protein L12
protein.
Length = 165
Score = 39.9 bits (89), Expect = 0.010
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 609 SPKKVGDDIAKATSDWEG 662
SPKKVGDDIAKAT DW+G
Sbjct: 38 SPKKVGDDIAKATGDWKG 55
Score = 33.5 bits (73), Expect = 0.83
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1
Query: 658 KGLKITVQLTVQNRQAQ 708
KGL+ITV+LT+QNRQAQ
Sbjct: 54 KGLRITVKLTIQNRQAQ 70
>BC105603-1|AAI05604.1| 165|Homo sapiens ribosomal protein L12
protein.
Length = 165
Score = 39.9 bits (89), Expect = 0.010
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 609 SPKKVGDDIAKATSDWEG 662
SPKKVGDDIAKAT DW+G
Sbjct: 38 SPKKVGDDIAKATGDWKG 55
Score = 33.5 bits (73), Expect = 0.83
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1
Query: 658 KGLKITVQLTVQNRQAQ 708
KGL+ITV+LT+QNRQAQ
Sbjct: 54 KGLRITVKLTIQNRQAQ 70
>BC094831-1|AAH94831.1| 165|Homo sapiens ribosomal protein L12
protein.
Length = 165
Score = 39.9 bits (89), Expect = 0.010
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 609 SPKKVGDDIAKATSDWEG 662
SPKKVGDDIAKAT DW+G
Sbjct: 38 SPKKVGDDIAKATGDWKG 55
Score = 33.5 bits (73), Expect = 0.83
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1
Query: 658 KGLKITVQLTVQNRQAQ 708
KGL+ITV+LT+QNRQAQ
Sbjct: 54 KGLRITVKLTIQNRQAQ 70
>BC050644-1|AAH50644.1| 165|Homo sapiens ribosomal protein L12
protein.
Length = 165
Score = 39.9 bits (89), Expect = 0.010
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 609 SPKKVGDDIAKATSDWEG 662
SPKKVGDDIAKAT DW+G
Sbjct: 38 SPKKVGDDIAKATGDWKG 55
Score = 33.5 bits (73), Expect = 0.83
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1
Query: 658 KGLKITVQLTVQNRQAQ 708
KGL+ITV+LT+QNRQAQ
Sbjct: 54 KGLRITVKLTIQNRQAQ 70
>AL445222-15|CAH72929.1| 165|Homo sapiens ribosomal protein L12
protein.
Length = 165
Score = 39.9 bits (89), Expect = 0.010
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 609 SPKKVGDDIAKATSDWEG 662
SPKKVGDDIAKAT DW+G
Sbjct: 38 SPKKVGDDIAKATGDWKG 55
Score = 33.5 bits (73), Expect = 0.83
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1
Query: 658 KGLKITVQLTVQNRQAQ 708
KGL+ITV+LT+QNRQAQ
Sbjct: 54 KGLRITVKLTIQNRQAQ 70
>AL021366-3|CAA16156.1| 165|Homo sapiens cICK0721Q.2 (60S Ribosomal
Protein L12 LIKE protein) protein.
Length = 165
Score = 39.9 bits (89), Expect = 0.010
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 609 SPKKVGDDIAKATSDWEG 662
SPKKVGDDIAKAT DW+G
Sbjct: 38 SPKKVGDDIAKATGDWKG 55
Score = 32.3 bits (70), Expect = 1.9
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +1
Query: 658 KGLKITVQLTVQNRQAQ 708
KGL+ITV+LT++NRQAQ
Sbjct: 54 KGLRITVKLTIENRQAQ 70
>AB209471-1|BAD92708.1| 197|Homo sapiens ribosomal protein L12
variant protein.
Length = 197
Score = 39.9 bits (89), Expect = 0.010
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 609 SPKKVGDDIAKATSDWEG 662
SPKKVGDDIAKAT DW+G
Sbjct: 70 SPKKVGDDIAKATGDWKG 87
Score = 33.5 bits (73), Expect = 0.83
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1
Query: 658 KGLKITVQLTVQNRQAQ 708
KGL+ITV+LT+QNRQAQ
Sbjct: 86 KGLRITVKLTIQNRQAQ 102
>BX088650-2|CAM26293.1| 203|Homo sapiens kinesin family member C1
protein.
Length = 203
Score = 33.5 bits (73), Expect = 0.83
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1
Query: 654 SHLWPWQCHHPPF*ET 607
SH PWQCHH PF ET
Sbjct: 87 SHPLPWQCHHQPFLET 102
>AL662799-3|CAM25565.1| 203|Homo sapiens kinesin family member C1
protein.
Length = 203
Score = 33.5 bits (73), Expect = 0.83
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1
Query: 654 SHLWPWQCHHPPF*ET 607
SH PWQCHH PF ET
Sbjct: 87 SHPLPWQCHHQPFLET 102
>BX248088-14|CAM25707.1| 203|Homo sapiens kinesin family member C1
protein.
Length = 203
Score = 31.1 bits (67), Expect = 4.4
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 654 SHLWPWQCHHPPF 616
SH PWQCHH PF
Sbjct: 87 SHPLPWQCHHQPF 99
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,605,561
Number of Sequences: 237096
Number of extensions: 2097136
Number of successful extensions: 3479
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3479
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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