Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1075
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...    39   0.003
U21308-3|AAB93322.2|  321|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AC024836-1|AAK39347.2|  475|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +3

Query: 609 SPKKVGDDIAKATSDWEGSQDHC 677
           SPKK+G+DIAKAT DW+G +  C
Sbjct: 38  SPKKIGEDIAKATQDWKGLKVTC 60



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 658 KGLKITVQLTVQNRQAQ 708
           KGLK+T +LT+QNR A+
Sbjct: 54  KGLKVTCKLTIQNRVAK 70


>U21308-3|AAB93322.2|  321|Caenorhabditis elegans Hypothetical
           protein ZK1290.5 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -1

Query: 708 LGLSVLNCQLHSDLETLPSHLWPWQCHHPPF*ETVRQKYC*KGYCRNIYLDLYKIN 541
           LG++V NC +  +   L + LWP  C    +     Q  C K   +  YLD+Y I+
Sbjct: 55  LGIAVKNCSVPREEMFLSTKLWPVDCGDEVY--NAFQTSCEK--LQTDYLDMYMIH 106


>AC024836-1|AAK39347.2|  475|Caenorhabditis elegans Hypothetical
           protein Y59E1A.1 protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
 Frame = +3

Query: 513 DGRIVLHHGNLFCTDPSKCFYSSPFNNI----FASQSPKKVGDDIAK 641
           DG  +LH     C  P  CF +SPF  +        SP K  +DI K
Sbjct: 344 DGCEILHSTAKTCAPPDPCFPTSPFFCVESPDVTDLSPDKPVEDILK 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,473,576
Number of Sequences: 27780
Number of extensions: 329046
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)