Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1075
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ...    32   0.47 
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ...    32   0.47 
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)            32   0.47 
At3g62750.1 68416.m07049 glycosyl hydrolase family 1 protein con...    29   3.3  
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi...    28   5.8  

>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
           RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
           PIR:T45883
          Length = 166

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +1

Query: 658 KGLKITVQLTVQNRQAQ 708
           KGL++TV+LTVQNRQA+
Sbjct: 55  KGLRVTVKLTVQNRQAK 71



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/19 (57%), Positives = 17/19 (89%), Gaps = 1/19 (5%)
 Frame = +3

Query: 609 SPKKVGDDIAKATS-DWEG 662
           +PKK+G+DIAK T+ +W+G
Sbjct: 38  APKKIGEDIAKETAKEWKG 56


>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
           RIBOSOMAL PROTEIN L12, Prunus armeniaca,
           SWISSPROT:RL12_PRUAR
          Length = 166

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +1

Query: 658 KGLKITVQLTVQNRQAQ 708
           KGL++TV+LTVQNRQA+
Sbjct: 55  KGLRVTVKLTVQNRQAK 71



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/19 (57%), Positives = 17/19 (89%), Gaps = 1/19 (5%)
 Frame = +3

Query: 609 SPKKVGDDIAKATS-DWEG 662
           +PKK+G+DIAK T+ +W+G
Sbjct: 38  APKKIGEDIAKETAKEWKG 56


>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
          Length = 166

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +1

Query: 658 KGLKITVQLTVQNRQAQ 708
           KGL++TV+LTVQNRQA+
Sbjct: 55  KGLRVTVKLTVQNRQAK 71



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/19 (57%), Positives = 17/19 (89%), Gaps = 1/19 (5%)
 Frame = +3

Query: 609 SPKKVGDDIAKATS-DWEG 662
           +PKK+G+DIAK T+ +W+G
Sbjct: 38  APKKIGEDIAKETAKEWKG 56


>At3g62750.1 68416.m07049 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; similar to hydroxyisourate hydrolase
           (GI:19569603) [Glycine max]
          Length = 486

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -1

Query: 429 TLFVFI*TGRTVRYQHLFNNNYRFEMRLPSFRMMMTTSYSGQQNI*FSSHLSKQFTQLKL 250
           T+F F   G+ VRY +    NY  E  +    M++  +++   N+    + SKQ   + L
Sbjct: 187 TIFAFAFYGKDVRYGNCTTGNYCMETYIAGHNMLL--AHASASNLYKLKYKSKQRGSIGL 244

Query: 249 SI 244
           SI
Sbjct: 245 SI 246


>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
           enzyme, putative similar to isoamylase from [Solanum
           tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
           [Hordeum vulgare] GI:21314275, [Oryza sativa]
           GI:3252794; contains Pfam profiles PF00128: Alpha
           amylase catalytic domain, PF02922: Isoamylase N-terminal
           domain
          Length = 783

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 96  GVADQAYYHD--IGYFRWLRLENVSGEYYRIC 185
           G  +  Y HD  + YFRW + E    +++R C
Sbjct: 618 GGNNNTYCHDNYMNYFRWDKKEEAHSDFFRFC 649


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,392,792
Number of Sequences: 28952
Number of extensions: 299951
Number of successful extensions: 592
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)