Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1074
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    31   0.25 
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    28   1.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    27   3.1  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    27   3.1  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   7.2  

>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
 Frame = +2

Query: 65   CS*PSRFPVSPQ-HSTEASQEETG-ALSIPPRAPVQVR*LGLLRKTSPVQLAGLRTLSAV 238
            C+ P+    SP  H+T ++   T  +L I    P+ +   G L++  P  L     LS +
Sbjct: 909  CTIPNSIFDSPNSHTTNSNSFFTKVSLDIYNNDPLLMD--GSLKRREPAFLLKKPLLSTL 966

Query: 239  GAEIRRLRDQSMRFGCATLDTKFTTLRSKAVICSERNYYG 358
              +++ +  +S   G   L   +TT+    +IC+  + YG
Sbjct: 967  NYQLKDINPRSSALGEYALHVTYTTVEEHLLICNWNDSYG 1006


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 122 EETGALSIPPRAPVQVR*LGLLRK--TSPVQLAGLRTLSA 235
           EETG LS PP  P+ +  L  LRK  +S + + G   +S+
Sbjct: 351 EETGGLSGPPLKPIALNTLRTLRKHLSSDIPIIGCGGISS 390


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +2

Query: 263  DQSMRFGCATLDTKFTTLRSKAVICSERNYYGTAFKSVSHFSDSFTLVMICPCDS*LSVN 442
            D+S     A    K T  R+  +    +  +G  F  +SH + +  + MI  CD   S+N
Sbjct: 1031 DESFAMKEAKTLVKKTCARTDYMSSELQKLFGIHFHKLSHKNPNEIIRMILHCDD--SMN 1088

Query: 443  SIEVEILGPDYLPNRTTLKLCIMVY 517
               VE L  D + N+  LK  +  Y
Sbjct: 1089 EC-VEFLSSDKVLNQPKLKADLEPY 1112


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 55  GRIVQLTVPISRLSSTLYRSFPRRDWRALH 144
           GR+ QLT  +S +  + YR F + +W ALH
Sbjct: 331 GRMSQLTKTLS-IHRSSYRVFGKHEWVALH 359


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -2

Query: 238 DCTERPKSGELHWGGLPQKTESADLDRCTGWDGER 134
           DC ERP+     W G   + +    D    WD +R
Sbjct: 125 DCMERPRKRGARWTGEDIQADEVIQDINVSWDAKR 159


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 621 LXLYVWVYTRLFV*LVFFYKQFKGNDNYITYSYFIGIKISVFEYYGLYRFQNKYFGF 791
           L  YVW  TR+   L+F + Q K + N+  +   +G    +F  +     +N + GF
Sbjct: 321 LDCYVWEKTRVNYMLIFEFNQRK-SLNWRQHLEIVGAVFFIFSLFFFLCMRNFFPGF 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,308,397
Number of Sequences: 5004
Number of extensions: 68737
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)