Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1074
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105... 38 0.009
09_06_0146 + 21186889-21187178,21187321-21187435,21188595-211886... 37 0.021
04_04_1171 - 31455136-31455482,31455805-31458982 32 0.46
08_02_0645 - 19666189-19666209,19666330-19666437,19667041-196671... 32 0.61
01_06_1463 + 37535360-37535617 31 1.4
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683... 30 1.9
04_04_1115 + 31008213-31008707,31009385-31009689,31010848-310111... 30 2.5
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 29 4.3
02_02_0328 - 9004670-9004753,9004873-9004947,9005031-9005132,900... 29 4.3
01_06_0703 - 31326790-31326894,31327015-31327126,31327324-313274... 29 5.7
06_03_1458 + 30301585-30301775,30302131-30302245,30302345-303024... 28 7.5
02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087... 28 7.5
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928... 28 7.5
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 28 9.9
03_05_0938 - 28978696-28978809,28978942-28979028,28979124-289792... 28 9.9
>02_01_0148 -
1051121-1051192,1051378-1051512,1052343-1052396,
1052501-1052581,1052667-1052826,1053346-1053453,
1053543-1053718,1053952-1054002,1054154-1054264,
1054493-1054547,1055667-1055789,1055922-1056007,
1056235-1056349,1056429-1056667
Length = 521
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 30 IKDILMVCWSYRAADRPDFPSLLNTLQKLPKK 125
+ ++L CW A+RPDF +L LQ+LPK+
Sbjct: 467 LSELLQKCWHRDPAERPDFSQILEILQRLPKE 498
>09_06_0146 +
21186889-21187178,21187321-21187435,21188595-21188686,
21188839-21188952,21189139-21189193,21189348-21189458,
21190226-21190279,21190362-21190537,21190623-21190730,
21191332-21191405,21191500-21191675,21192169-21192264,
21192534-21192614,21192713-21192766,21193246-21193380,
21193453-21193533
Length = 603
Score = 36.7 bits (81), Expect = 0.021
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 18 ASRDIKDILMVCWSYRAADRPDFPSLLNTLQKLPKK 125
A + ++L CW A+RPDF +L TLQ++ ++
Sbjct: 542 AHAKLSELLQKCWQQEPAERPDFSEILETLQRIAEE 577
>04_04_1171 - 31455136-31455482,31455805-31458982
Length = 1174
Score = 32.3 bits (70), Expect = 0.46
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 6 ANMQASRDIKDILMVCWSYRAADRPDFPSLLNTLQKLPK 122
A++ + D+ + + C ++ ADRPD ++L++L K+ K
Sbjct: 1131 ADLSTAADVLAVALSCAAFEPADRPDMGAVLSSLLKMSK 1169
>08_02_0645 -
19666189-19666209,19666330-19666437,19667041-19667152,
19667321-19667417,19667809-19667911,19668071-19668152,
19668519-19668665,19668763-19668863,19669037-19669231
Length = 321
Score = 31.9 bits (69), Expect = 0.61
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 160 CPGPLTRSSEEDLPSATRRTSDAQCSRCRNTSPSRSIY 273
C PL SS++ P + +S +CS C+ P+R Y
Sbjct: 87 CYYPLISSSDQSAPVSAASSSSLECSTCKKFYPNRGDY 124
>01_06_1463 + 37535360-37535617
Length = 85
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -3
Query: 165 WTGARGGMESAPVSSWEASVEC*GETGNRDGQLH 64
WT GG S PV++WE S G G R G H
Sbjct: 15 WTAIAGGTGSQPVAAWEGSAG--GTGGQRPGGPH 46
>06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,
6836348-6836416,6836495-6836593,6836681-6836759,
6837604-6837704,6838645-6838713,6839548-6839588,
6839793-6841159,6841472-6841575,6841914-6842351,
6843040-6843567
Length = 1078
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 30 IKDILMVCWSYRAADRPDFPSLLNTLQKLPKKRLARSP 143
I +I+ CW RP F ++++L+ L K LA P
Sbjct: 1031 IAEIIRRCWQTDPKMRPSFSEIMSSLKPLLKNTLANQP 1068
>04_04_1115 +
31008213-31008707,31009385-31009689,31010848-31011108,
31011193-31011401,31011490-31011783,31011861-31011901,
31011987-31012055,31012164-31012264,31012351-31012435,
31012539-31012637,31012731-31012799,31012909-31013040,
31013128-31013222,31013340-31013421
Length = 778
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 51 CWSYRAADRPDFPSLLNTLQKLPKKRLARS 140
CW RP F S+++TL+KL K L S
Sbjct: 749 CWDDDPRQRPSFSSIVDTLKKLLKSMLGGS 778
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +1
Query: 61 IVQLTVPISRLSSTLYRSFPRRDWRA---LHPTPCTCPGPLTRSSEEDLPSAT 210
+V+ V +SR + R FP R+ L PCT GP S+ +P ++
Sbjct: 1622 VVRTPVHVSRTVESTSRQFPEYGTRSSEILQRAPCTLDGPKVPSTTNGIPPSS 1674
>02_02_0328 -
9004670-9004753,9004873-9004947,9005031-9005132,
9005681-9005761,9006233-9006535
Length = 214
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 73 TVPISRLSSTLYRSFPRRDWRALHPTPCTCPGPLTRSSEEDL 198
++P SR S + S PRR WR L P P+ +E ++
Sbjct: 23 SLPASRCSLPVAASAPRRCWRLLASAEEPAPAPVEAEAEAEV 64
>01_06_0703 -
31326790-31326894,31327015-31327126,31327324-31327445,
31327573-31327658,31327783-31327901,31327991-31328053,
31328142-31328221,31328801-31328921,31329040-31329125,
31329318-31329413,31329510-31329584,31329869-31330210
Length = 468
Score = 28.7 bits (61), Expect = 5.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 30 IKDILMVCWSYRAADRPDFPSLLNTL 107
+++++ CWS A RPDF +++ L
Sbjct: 395 LRELIEQCWSENPASRPDFRTIIEQL 420
>06_03_1458 +
30301585-30301775,30302131-30302245,30302345-30302430,
30302552-30302662,30303154-30303208,30303327-30303437,
30304347-30304403,30304847-30305016,30305103-30305210,
30305643-30305716,30305757-30305779,30306188-30306283,
30306502-30306582,30306934-30307068,30307162-30307227,
30307283-30307297
Length = 497
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 39 ILMVCWSYRAADRPDFPSLLNTLQKL 116
+L CW A +RPDF +L L ++
Sbjct: 443 LLESCWQQNAVNRPDFVQILQKLDEI 468
>02_05_0999 + 33405982-33408279,33408356-33408466,33408551-33408703,
33408870-33409033,33409113-33409210,33409296-33409474,
33409588-33409675,33410285-33410451
Length = 1085
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 33 KDILMVCWSYRAADRPDFPSLLNTLQKL 116
K ++ CW+ ADRP F + L+K+
Sbjct: 1051 KSLMENCWASEPADRPSFTEISQRLRKM 1078
>02_05_0717 + 31190626-31191234,31191954-31192394,31192699-31192802,
31193000-31194384,31194508-31194548,31195065-31195133,
31195335-31195435,31195747-31195825,31195939-31196037,
31196119-31196187,31197609-31197658,31197749-31197925,
31198045-31198152,31198224-31198290
Length = 1132
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 30 IKDILMVCWSYRAADRPDFPSLLNTLQKLPKKRLARSPSHPV 155
I +I+ CW RP F ++ +L+ L K A++P V
Sbjct: 1065 IAEIIAKCWQTDPKLRPSFADIMASLKPLLKNMTAQAPRQRV 1106
>08_02_0749 - 20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 292 SRTTEPHRLISKATYFGTDCTERPKSGELH 203
SR + P R+ S+ F D RP+SGEL+
Sbjct: 1327 SRRSPPLRVTSRNDRFDVDSHGRPRSGELY 1356
>03_05_0938 -
28978696-28978809,28978942-28979028,28979124-28979256,
28979592-28979865,28980242-28980368,28980523-28980773,
28980854-28980935
Length = 355
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -2
Query: 172 ADLDRCTGWDGERASLFLGSFCRVLRRDGKSGRSAA 65
A+L+R TG G+R+ + GS+ RV R +G +AA
Sbjct: 56 AELNRLTGNFGDRSLVGEGSYGRVYRATLSTGEAAA 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,985,867
Number of Sequences: 37544
Number of extensions: 445505
Number of successful extensions: 1259
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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