Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1074
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_58458| Best HMM Match : Guanylate_cyc (HMM E-Value=1.2e-36)         31   1.1  
SB_30649| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-24)               31   1.1  
SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 31   1.1  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)                  29   4.4  
SB_23401| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_7330| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_55271| Best HMM Match : SspH (HMM E-Value=7.1)                      29   5.8  
SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_41626| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_39229| Best HMM Match : Phage_holin_1 (HMM E-Value=3.5)             28   7.7  
SB_34112| Best HMM Match : RVT_1 (HMM E-Value=0.041)                   28   7.7  
SB_33615| Best HMM Match : PA (HMM E-Value=9e-16)                      28   7.7  
SB_3435| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)                  28   7.7  
SB_59683| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)                 28   7.7  
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      28   7.7  
SB_1188| Best HMM Match : Guanylate_cyc (HMM E-Value=6.7)              28   7.7  

>SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1604

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 36   DILMVCWSYRAADRPDFPSLLNTLQKL 116
            D+++ CW +  A RP F  LL T+ K+
Sbjct: 1385 DLMLRCWQHDPAQRPTFTQLLETIDKI 1411


>SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 27  DIKDILMVCWSYRAADRPDFPSLLNTLQKL 116
           D+  I++ CW  +  DRP F +L +TL+ L
Sbjct: 860 DLYTIMLSCWKDKPEDRPTFENLRSTLEDL 889


>SB_58458| Best HMM Match : Guanylate_cyc (HMM E-Value=1.2e-36)
          Length = 1065

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 30  IKDILMVCWSYRAADRPDFPSLLNTLQKLPKKRLARSPSHPVHL 161
           I D+   CW      RPDF  +  T++KLP  + +    + V+L
Sbjct: 657 IVDLAKWCWEENPDHRPDFEEIRKTVRKLPMGKQSNIMDNMVNL 700


>SB_30649| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-24)
          Length = 463

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 3   LANMQASRDIKDILMVCWSYRAADRPDFPSLLNTLQK 113
           L +++     K+++  CWS  + DRPDF  ++   Q+
Sbjct: 120 LRHVKCPEKTKNLIRECWSDNSEDRPDFAKIVQFFQE 156


>SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1038

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 30  IKDILMVCWSYRAADRPDFPSLLNTLQKLPKKRLARSPS-HPVHLSRSADSVF*GRPP 200
           I  I+  CW+     RP F  LL  L+++ K+++  +PS +P HL    D VF  + P
Sbjct: 812 IYQIMKDCWNIDPEARPKFDELLRRLKQV-KEQVGATPSPNPRHLG-PLDFVFSAKTP 867


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -3

Query: 243  APTALSVRSPASCTGEVFLRRPSQRTWTGARGGMESAPVSSWEASVEC*GETGNRDGQLH 64
            AP+    RS ++   +     P  R  TG+ G ++ A V S   S    G TG+R+G+  
Sbjct: 6270 APSIAKARSGSNLRAQAKSPTPGMRK-TGSYGALKDAKVVSRSDSQSSIGSTGSREGEPE 6328

Query: 63   DTT 55
             T+
Sbjct: 6329 GTS 6331


>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 3   LANM-QASRDIKDILMVCWSYRAADRPDFPSLLNTLQKLPKK 125
           +AN+   + +++D++  CW+     RPDF  +  T++++  K
Sbjct: 756 VANLIDGAEELRDLMKQCWAEDPDLRPDFTEIKKTVRRIVDK 797


>SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)
          Length = 507

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = -3

Query: 663 VKQTIGCIPKHT--RXKLLQYNLIFLINSNYFKLI-SIGIV 550
           VK +   + KHT     +L +NLIFLI +++++ +  IGI+
Sbjct: 374 VKPSCSVVTKHTWILSSILSFNLIFLILASWYRFVPHIGII 414


>SB_23401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 27  DIKDILMVCWSYRAADRPDFPSLLNTLQKL 116
           +I D++M CW+     RP F  L   L+ L
Sbjct: 324 EIYDVMMSCWNAEPEVRPSFAKLCTVLESL 353


>SB_7330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 42  LMVCWSYRAADRPDFPSLLNTLQKLPKK 125
           ++ CWS   ADRP F  L + L  + K+
Sbjct: 1   MLACWSCEPADRPSFKELRDILWDMQKE 28


>SB_55271| Best HMM Match : SspH (HMM E-Value=7.1)
          Length = 248

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/61 (34%), Positives = 26/61 (42%)
 Frame = +1

Query: 94  SSTLYRSFPRRDWRALHPTPCTCPGPLTRSSEEDLPSATRRTSDAQCSRCRNTSPSRSIY 273
           SS L  SF   +    +P    C     R ++     AT  TSD Q +RCR   PS S  
Sbjct: 2   SSFLTDSFLENNPHGEYPDRFPCYYTRLRKAQTQSDDATN-TSDTQPTRCRKHEPSPSAC 60

Query: 274 E 276
           E
Sbjct: 61  E 61


>SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 872

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 196 GLPQKTESADLDRCTGWDGERASLFLGSFCRVLRRDGKSGRSAAR 62
           G+PQ  E +++    GW     +LF     +VL   G S R A++
Sbjct: 794 GVPQGAELSEIMDHIGWSNRHTALFYMQLEKVLNPAGASARLASK 838


>SB_41626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 27  DIKDILMVCWSYRAADRPDFPSLLNTLQKL 116
           D+ +I+  CW     DRP F  L+  L K+
Sbjct: 621 DVYNIMTDCWVLSPEDRPTFTELVKKLDKM 650


>SB_39229| Best HMM Match : Phage_holin_1 (HMM E-Value=3.5)
          Length = 636

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 133 RALHPTPCTCPGPLTRSSEEDLPSATRRTSDAQCSRCRNTSPSRS 267
           R+L   P  CP  + R S+    S+T ++S     R  +T PSRS
Sbjct: 116 RSLMEIPSLCPKNVDRVSDRKYESSTEKSSLPVEERRASTLPSRS 160


>SB_34112| Best HMM Match : RVT_1 (HMM E-Value=0.041)
          Length = 858

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = -2

Query: 274 HRLISKATYFGTDCTERPKSGELHWGGLPQKTESADLDRCTGWDGERASLFLGSFCRVLR 95
           H LISK   +G        +G L  GG    +  A+LD   GW  E    F  S C+V+ 
Sbjct: 603 HLLISKLQQYGV-------TGSLREGG-SVLSSMANLDSLCGWSLEHGMEFSASKCKVVH 654

Query: 94  RDGKSGRSAARY 59
              K       Y
Sbjct: 655 MSKKRSTKRPPY 666


>SB_33615| Best HMM Match : PA (HMM E-Value=9e-16)
          Length = 629

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 675 YKQFKGNDNYITYSYFIGIKISVFEYYGLYRFQNKYFGFY 794
           Y       +Y  +SYF+GI ++ F Y   Y  ++ ++  Y
Sbjct: 391 YNGVASGSDYAPFSYFVGIPVADFTYAMGYENKSMFYPVY 430


>SB_3435| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)
          Length = 314

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/62 (20%), Positives = 30/62 (48%)
 Frame = +3

Query: 597 ISNYIEVVLXLYVWVYTRLFV*LVFFYKQFKGNDNYITYSYFIGIKISVFEYYGLYRFQN 776
           ++N+   ++ + +W++  +F  L  FY     N  + T +  IG  +++F +    R   
Sbjct: 147 VTNFRICIVLVVIWIFAAVFTILRMFYPNTAIN-AFFTTAILIGFAVTIFCFGQTLRIVR 205

Query: 777 KY 782
           K+
Sbjct: 206 KH 207


>SB_59683| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)
          Length = 325

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/62 (20%), Positives = 30/62 (48%)
 Frame = +3

Query: 597 ISNYIEVVLXLYVWVYTRLFV*LVFFYKQFKGNDNYITYSYFIGIKISVFEYYGLYRFQN 776
           ++N+   ++ + +W++  +F  L  FY     N  + T +  IG  +++F +    R   
Sbjct: 158 VTNFRICIVLVVIWIFAAVFTILRMFYPNTAIN-AFFTTAILIGFAVTIFCFGQTLRIVR 216

Query: 777 KY 782
           K+
Sbjct: 217 KH 218


>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 246 SAPTALSVRSPASCTGEVFLRRPSQ-RTWTGARGGMES 136
           + PTA+  R P + +G   LRRP + R  +G +GG  S
Sbjct: 339 AVPTAIQPRPPRTGSGNKSLRRPVRVRGGSGGKGGRGS 376


>SB_1188| Best HMM Match : Guanylate_cyc (HMM E-Value=6.7)
          Length = 215

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 39  ILMVCWSYRAADRPDFPSLLNTLQKLPKKR 128
           ++  CW    A RP+F S+L  L+K+ K R
Sbjct: 33  LMQECWEESPALRPNFFSILRRLKKINKGR 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,332,607
Number of Sequences: 59808
Number of extensions: 511374
Number of successful extensions: 1745
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1720
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)