Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1074
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39853-2|AAK39225.1|  771|Caenorhabditis elegans Kinase suppress...    48   1e-05
U38820-1|AAA92436.1|  771|Caenorhabditis elegans KSR-1 protein.        48   1e-05
S80647-1|AAB35769.1|  771|Caenorhabditis elegans KSR-1 protein.        48   1e-05
U00036-11|AAK29851.2|   58|Caenorhabditis elegans Hypothetical p...    33   0.18 
U00036-10|AAP82638.1|  276|Caenorhabditis elegans Hypothetical p...    33   0.18 
U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas...    31   1.3  
AF026215-10|AAB71320.2|  971|Caenorhabditis elegans Hypothetical...    30   1.7  
AF067607-4|AAF98610.2|  390|Caenorhabditis elegans Hypothetical ...    29   2.9  
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81058-8|CAB02923.1|  442|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AC006634-3|AAF39795.3|  535|Caenorhabditis elegans Hypothetical ...    29   5.1  
U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    28   6.8  
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    28   6.8  
AF106592-5|AAK21368.1|  525|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U39853-2|AAK39225.1|  771|Caenorhabditis elegans Kinase suppressor
           of activatedras protein 1 protein.
          Length = 771

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = +3

Query: 3   LANMQASRDIKDILMVCWSYRAADRPDFPSLLNTLQKLPKK-RLARSPSHPVHLSRSADS 179
           L N++ ++++K++L+ CW+    DRP    +   L  LPKK R+ RSPS PV + +S +S
Sbjct: 711 LPNVKCTQELKELLVSCWNTAPQDRPTLTDINLKLTALPKKPRVNRSPSFPV-MMKSYES 769

Query: 180 VF 185
            F
Sbjct: 770 TF 771


>U38820-1|AAA92436.1|  771|Caenorhabditis elegans KSR-1 protein.
          Length = 771

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = +3

Query: 3   LANMQASRDIKDILMVCWSYRAADRPDFPSLLNTLQKLPKK-RLARSPSHPVHLSRSADS 179
           L N++ ++++K++L+ CW+    DRP    +   L  LPKK R+ RSPS PV + +S +S
Sbjct: 711 LPNVKCTQELKELLVSCWNTAPQDRPTLTDINLKLTALPKKPRVNRSPSFPV-MMKSYES 769

Query: 180 VF 185
            F
Sbjct: 770 TF 771


>S80647-1|AAB35769.1|  771|Caenorhabditis elegans KSR-1 protein.
          Length = 771

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = +3

Query: 3   LANMQASRDIKDILMVCWSYRAADRPDFPSLLNTLQKLPKK-RLARSPSHPVHLSRSADS 179
           L N++ ++++K++L+ CW+    DRP    +   L  LPKK R+ RSPS PV + +S +S
Sbjct: 711 LPNVKCTQELKELLVSCWNTAPQDRPTLTDINLKLTALPKKPRVNRSPSFPV-MMKSYES 769

Query: 180 VF 185
            F
Sbjct: 770 TF 771


>U00036-11|AAK29851.2|   58|Caenorhabditis elegans Hypothetical
           protein R151.4b protein.
          Length = 58

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 15  QASRDIKDILMVCWSYRAADRPDFPSLLNTLQKLPKKRLARSPSHP 152
           + S D+  ++  CW+ +A DRP F ++L+ ++++        PS P
Sbjct: 8   KCSDDMYILMKSCWNLKAEDRPSFLAILSKIEQIANVDADAPPSDP 53


>U00036-10|AAP82638.1|  276|Caenorhabditis elegans Hypothetical
           protein R151.4a protein.
          Length = 276

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 15  QASRDIKDILMVCWSYRAADRPDFPSLLNTLQKLPKKRLARSPSHP 152
           + S D+  ++  CW+ +A DRP F ++L+ ++++        PS P
Sbjct: 226 KCSDDMYILMKSCWNLKAEDRPSFLAILSKIEQIANVDADAPPSDP 271


>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
            protein 12 protein.
          Length = 1280

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = +3

Query: 6    ANMQASRDIKDILMVCWSYRAADRPDFPSLLNTLQKL 116
            ++++    +K+++  CW +    RP+F ++ N L+ L
Sbjct: 918  SDLEVQNYVKEVMAACWHHDPYQRPEFKTIKNKLKPL 954


>AF026215-10|AAB71320.2|  971|Caenorhabditis elegans Hypothetical
           protein F09G2.1 protein.
          Length = 971

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 18  ASRDIKDILMVCWSYRAADRPDFPSL 95
           A+  I++I+  CWS ++ +RPDF  L
Sbjct: 784 ATDKIEEIMSSCWSEKSEERPDFDEL 809


>AF067607-4|AAF98610.2|  390|Caenorhabditis elegans Hypothetical
           protein C18H7.4 protein.
          Length = 390

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 24  RDIKDILMVCWSYRAADRPDFPSLLNTLQKLPKKRLARSPS 146
           +D+  +L  CW++    RP+   L   L+ L +K  A  PS
Sbjct: 345 KDVASLLAECWNHDPEKRPNAEKLKEKLEDLNQKYEAGEPS 385


>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical protein
            T14E8.1c protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 36   DILMVCWSYRAADRPDFPSLLNTLQKLPK 122
            D+++ CW    A+RP F  L+  +  + K
Sbjct: 970  DVMLACWKANPAERPQFSDLVTIIPNVVK 998


>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical protein
            T14E8.1b protein.
          Length = 1030

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 36   DILMVCWSYRAADRPDFPSLLNTLQKLPK 122
            D+++ CW    A+RP F  L+  +  + K
Sbjct: 970  DVMLACWKANPAERPQFSDLVTIIPNVVK 998


>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical protein
            T14E8.1a protein.
          Length = 1086

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 36   DILMVCWSYRAADRPDFPSLLNTLQKLPK 122
            D+++ CW    A+RP F  L+  +  + K
Sbjct: 970  DVMLACWKANPAERPQFSDLVTIIPNVVK 998


>Z81058-8|CAB02923.1|  442|Caenorhabditis elegans Hypothetical
           protein F11E6.8 protein.
          Length = 442

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 30  IKDILMVCWSYRAADRPDFPSLLNTLQKL 116
           I D++  CW     DRPDF  L + L+ L
Sbjct: 374 IYDLMQCCWRSTPEDRPDFVFLSHRLRAL 402


>AC006634-3|AAF39795.3|  535|Caenorhabditis elegans Hypothetical
           protein F35F11.1 protein.
          Length = 535

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 60  YRAADRPDFPSLLNTLQKLPKKRLARSPSHPVHLSRSADSVF*GRPPQCNSPD 218
           Y   DR DFP+L+N +  L  ++L  S S P       D    G P   ++ D
Sbjct: 97  YLQGDRTDFPALMNQVNPLSLRQLLHS-SEPEAKKPRLDGEAAGEPMDTSTSD 148


>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 639 VYTRLFV*LVFF-YKQFKGNDNYITYSYFIGIKISVFEY 752
           V+T L V +VFF  +  K N NYI+ S  +G  ISV  +
Sbjct: 58  VFT-LVVPMVFFDLEVLKANSNYISLSMLLGYDISVLSH 95


>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
            constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +3

Query: 30   IKDILMVCWSYRAADRPDFPSLLNTLQKLPKKRLARSPSHPVH 158
            +  ++  CW   AADRP F  ++   Q +     +     P+H
Sbjct: 1241 VYQLMRDCWKTAAADRPKFVDVVEIFQDIQDDPASVGMPFPIH 1283


>AF106592-5|AAK21368.1|  525|Caenorhabditis elegans Hypothetical
           protein D1037.5 protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 27  DIKDILMVCWS---YRAADRPDFPSLLNTLQKLPKK 125
           D++ ++ V W    Y A+ RP F  L+N L   PK+
Sbjct: 451 DLEKVMQVMWETEQYVASHRPQFVKLVNYLATKPKR 486


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,172,158
Number of Sequences: 27780
Number of extensions: 385637
Number of successful extensions: 1075
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)