Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1074
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    29   0.038
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   1.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       24   1.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.9  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 29.5 bits (63), Expect = 0.038
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 6   ANMQASRDIKDILMVCWSYRAADRPDFPSLLNTLQKL 116
           A M     I  +++ CW      RP F +L  TL KL
Sbjct: 859 APMDCPEAIYQLMLDCWQKERTHRPTFANLTQTLDKL 895


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 708 TYSYFIGIKISVFEYYGLYR 767
           T S+++ + + VF YY +YR
Sbjct: 212 TISFYLPLFVMVFTYYKIYR 231


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 75  RPDFPSLLNTLQKLPKK 125
           RPDF ++L  LQK P+K
Sbjct: 267 RPDFINMLMELQKNPQK 283


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 563 DINLK*LEFIKNIKLY*SSFXLVCLGI 643
           D+  + + F +   LY SSF LVC+ +
Sbjct: 108 DVMCRIMAFFRMFGLYLSSFVLVCISM 134


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 3   LANMQASRDIKDILMVCWSYRAADRPDFPSLLNTLQKL 116
           LAN  A RDI D+L V +     D+ +  ++L T+  L
Sbjct: 67  LAN-SAKRDINDVLNVLYFINKNDKYEENTILTTMPLL 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,826
Number of Sequences: 438
Number of extensions: 4856
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)