Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1072
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    30   0.016
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    30   0.016
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.0  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    24   1.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   1.4  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   1.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   4.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   4.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.5  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   5.5  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    21   9.7  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   9.7  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 21  WWFIFLKMASVATVTRALLGKNVLNKCKVVSATSQASIKFYSTASYENIKVE 176
           W   FLK+ ++ TV   +LG  V++K   +  TSQ  IK   T +Y N K++
Sbjct: 55  WGVKFLKVVTIITVFFVVLGAAVVSKGTTLFMTSQ--IKKNVTRAYCNKKID 104


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 21  WWFIFLKMASVATVTRALLGKNVLNKCKVVSATSQASIKFYSTASYENIKVE 176
           W   FLK+ ++ TV   +LG  V++K   +  TSQ  IK   T +Y N K++
Sbjct: 55  WGVKFLKVVTIITVFFVVLGAAVVSKGTTLFMTSQ--IKKNVTRAYCNKKID 104


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = -1

Query: 643 PVNTISIAFDLPTYLGRRWVPPAPGMVPMLISG*PNFAFSPA*MISHSIASSQPPPRAKP 464
           P++T S+  D   +     +PP PG+ P      P+ +  PA +++       P    KP
Sbjct: 211 PISTSSLPSDFYRFSPTGLIPPHPGLSPHP----PHLSSHPA-IVTPGPKQELPDLNHKP 265

Query: 463 LTAAMMGFP 437
           L   +   P
Sbjct: 266 LNLTIKKMP 274


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = -1

Query: 643 PVNTISIAFDLPTYLGRRWVPPAPGMVPMLISG*PNFAFSPA*MISHSIASSQPPPRAKP 464
           P++T S+  D   +     +PP PG+ P      P+ +  PA +++       P    KP
Sbjct: 103 PISTSSLPSDFYRFSPTGLIPPHPGLSPHP----PHLSSHPA-IVTPGPKQELPDLNHKP 157

Query: 463 LTAAMMGFP 437
           L   +   P
Sbjct: 158 LNLTIKKMP 166


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 517 MPAKRRNSVNPRSTLAPSPEPEAPSVFPDTLASRK 621
           +P +  ++ +  S  +PS  PE  SV P +L  R+
Sbjct: 202 IPQRTASTASSASNYSPSQSPEPESVRPLSLVVRR 236


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 507 RTALPAHNHPQE 472
           RT LP H HPQ+
Sbjct: 374 RTNLPTHRHPQD 385


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 428 LQLWETHHCRC*WFRSWGWL*AGN 499
           L++   HHCR  +  S GW  AG+
Sbjct: 69  LEMTLAHHCRFKFSSSVGWSPAGH 92


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/54 (22%), Positives = 22/54 (40%)
 Frame = +1

Query: 520 PAKRRNSVNPRSTLAPSPEPEAPSVFPDTLASRKQWRSC*QETSLMLMXPXNGS 681
           P + R +++      P+      + FP   +  +QWR+    TS       NG+
Sbjct: 329 PKRPRPNIDRHEVTRPAAPANRGNGFPKRSSDEQQWRNNQPSTSNNRWHNNNGN 382


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +3

Query: 558 IGTIPGAGGTQ--RLPRYVGKSKAMEIVLTGNF 650
           +GT+ GAGGT    +   V  S  + IV  G F
Sbjct: 287 VGTMTGAGGTAIVSISTSVSTSVYLAIVFNGLF 319


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 538 SVNPRSTLAPSPEPEAPSVFPDTLASRKQWRSC*QETSLM 657
           SV+P +   PSP PE   + P   AS K+  +    T L+
Sbjct: 92  SVSPTTPPTPSPPPE-ERLTPSKDASSKRIXTAFTSTQLL 130


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 557 HWHHPRSRRHPASSQIRWQVESNG 628
           HWH   S+  P  SQ   Q+  NG
Sbjct: 273 HWHLTDSQSFPLVSQRVPQLAKNG 296


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 493 WQCCAISSMPAKRRNSVNP 549
           W+   +S  P +RR S NP
Sbjct: 174 WEGTTLSQSPNRRRASSNP 192


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 41  NGFCRYCNSCFAGKECTEQVQSGI 112
           +G C   +SC A K C    +S I
Sbjct: 107 DGICCSQDSCHADKSCASDDKSPI 130


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 308 SNVAVGVKIIDCLPEFNKQW 249
           SN A   KI+  LP F + W
Sbjct: 285 SNGAPSAKIVLGLPTFGRAW 304


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,182
Number of Sequences: 336
Number of extensions: 4003
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)