Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1072
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 78 1e-15
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 30 0.37
SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces po... 27 2.0
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 3.4
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 6.0
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 26 6.0
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 6.0
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 7.9
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 7.9
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 7.9
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 77.8 bits (183), Expect = 1e-15
Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 10/184 (5%)
Frame = +3
Query: 90 LNKCKVVSATSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELG 269
LN +S + KFYST+S + + E SK + LNRPK LNA+ + +
Sbjct: 33 LNASSTMSRAFIRNPKFYSTSSNDTVLYE---SKNGARIFTLNRPKVLNAINVDMIDSIL 89
Query: 270 KAVNDFDADSNIAAIIIT-GNEKAFAAGADIKEMQNNTYSSN---TKQGFLREWE---DI 428
+ + +SN+A +II GN ++F++G DIK + + F +E+ +
Sbjct: 90 PKLVSLE-ESNLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTL 148
Query: 429 SNCGKPIIAAVNGFALGGGCELAMLCDIIYAGEKAKFGQPEINIGTIPGAGGT---QRLP 599
+ KP++A +NG +GGG LAM A E F PE IG + RLP
Sbjct: 149 ATYQKPVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLP 208
Query: 600 RYVG 611
Y G
Sbjct: 209 GYFG 212
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 529 RRNSVNPRSTLAPSPEPEAPSVFPDTLASRK 621
RR+S + RS + EPE PS+ + +AS K
Sbjct: 10 RRSSTSKRSVIDDDSEPELPSMTKEAIASHK 40
>SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 107
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 50 CRYCNSCFA-GKECTEQVQSGIRNKPSIYKVL 142
C+ CNS GK C+ + + R PSI +VL
Sbjct: 59 CKGCNSLLVPGKSCSIRFEEPSRKNPSIDRVL 90
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 523 AKRRNSVNPRSTLAPSPEPEAPSVFP 600
AK + V P AP EP PS+ P
Sbjct: 290 AKSKKKVTPAPAPAPESEPSKPSIAP 315
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 520 PAKRRNSVNPRSTLAPSPEPEAP 588
P K +N+++ + L PSPE +AP
Sbjct: 154 PGKEKNTLDLKHCLLPSPEYKAP 176
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 409 RKPCFVLLLYVLFCISLISAP 347
RKP F LLY ++ +L++ P
Sbjct: 228 RKPAFTSLLYAIYASALLATP 248
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 360 KEMQNNTYSSNTKQGFLRE-WEDISNCGKPIIAAVNG 467
K M+++ S N K F ++ WED+ +C K + NG
Sbjct: 304 KYMKSDKSSKNFKPPFQKKSWEDLVDCVKTVQQLDNG 340
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 508 SHSIASSQPPPRAKPLTAAMMGFPQLEMSS 419
S+S SS P A+PLTA +GF + S
Sbjct: 268 SNSAQSSLFSPTARPLTARKLGFASSQTKS 297
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.9
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Frame = +3
Query: 462 NGF-ALG---GGC---ELAMLCDIIYAGEKAKFGQPEINIGTIPGAGGTQRLPRYV 608
NGF ALG GG LA CD G P I TIPG T + + V
Sbjct: 98 NGFYALGLSQGGLFLRALAQTCDAAKIRSLITLGSPHSGINTIPGCSPTNLICKAV 153
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +3
Query: 261 ELGKAVNDFDADSNI-AAIIITGNEK---AFAAGADIKEMQNNTYSSNTKQGFLREWED 425
EL + ++++ S I A+ + N K +F IKE++ TY+ Q E++D
Sbjct: 11 ELKRYLDEYGVWSKIFRALFVARNSKPLRSFCVHYAIKELKEKTYNLELYQSLFEEFQD 69
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 548 RDQHWHHPRSRRHPASSQIRWQVESNGDRV 637
RD + RSR+ ++ R++ E NGD+V
Sbjct: 56 RDSEYFRGRSRKFQIQAEGRFKKEYNGDQV 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,612
Number of Sequences: 5004
Number of extensions: 65536
Number of successful extensions: 200
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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