Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1072
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g16210.1 68417.m02460 enoyl-CoA hydratase/isomerase family pr... 114 5e-26
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat... 105 2e-23
At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family pr... 102 2e-22
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP... 98 6e-21
At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar t... 96 2e-20
At1g60550.1 68414.m06816 naphthoate synthase, putative / dihydro... 91 5e-19
At2g30660.1 68415.m03739 3-hydroxyisobutyryl-coenzyme A hydrolas... 75 5e-14
At5g65940.1 68418.m08301 3-hydroxyisobutyryl-coenzyme A hydrolas... 68 7e-12
At4g31810.1 68417.m04521 enoyl-CoA hydratase/isomerase family pr... 68 7e-12
At3g60510.1 68416.m06768 enoyl-CoA hydratase/isomerase family pr... 65 5e-11
At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolas... 65 5e-11
At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family pr... 64 1e-10
At3g24360.1 68416.m03058 enoyl-CoA hydratase/isomerase family pr... 56 2e-08
At4g13360.1 68417.m02089 enoyl-CoA hydratase/isomerase family pr... 54 7e-08
At1g65520.1 68414.m07434 enoyl-CoA hydratase/isomerase family pr... 38 0.005
At3g08760.1 68416.m01018 protein kinase family protein contains ... 31 0.73
At5g56110.1 68418.m07000 myb family transcription factor contain... 30 1.7
At4g14430.1 68417.m02226 enoyl-CoA hydratase/isomerase family pr... 29 2.2
At1g71740.1 68414.m08292 hypothetical protein 29 3.0
At4g15820.1 68417.m02407 wound-responsive protein-related contai... 28 5.2
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 28 6.8
At4g14440.1 68417.m02227 enoyl-CoA hydratase/isomerase family pr... 28 6.8
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co... 28 6.8
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa... 28 6.8
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa... 27 9.0
At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containi... 27 9.0
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 27 9.0
At2g34750.1 68415.m04267 RNA polymerase I specific transcription... 27 9.0
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 27 9.0
>At4g16210.1 68417.m02460 enoyl-CoA hydratase/isomerase family
protein similar to 3-hydroxybutyryl-CoA dehydratase
(Crotonase) from Clostridium acetobutylicum [SP|P52046],
FadB1x (enoyl-CoA hydratase) from Pseudomonas putida
[GI:13310130]; contains Pfam profile PF00378 enoyl-CoA
hydratase/isomerase family protein
Length = 265
Score = 114 bits (275), Expect = 5e-26
Identities = 57/161 (35%), Positives = 91/161 (56%)
Frame = +3
Query: 159 ENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITGNEKA 338
EN+ ++V + +I +NRPK+LN+L + + V+L KA D D+D ++ +I TG+ ++
Sbjct: 7 ENL-IQVKKESGGIAVITINRPKSLNSLTRAMMVDLAKAFKDMDSDESVQVVIFTGSGRS 65
Query: 339 FAAGADIKEMQNNTYSSNTKQGFLREWEDISNCGKPIIAAVNGFALGGGCELAMLCDIIY 518
F +G D+ ++ + + K + KPII A+NGFA+ G ELA+ CDI+
Sbjct: 66 FCSGVDLTAAES-VFKGDVKDPETDPVVQMERLRKPIIGAINGFAITAGFELALACDILV 124
Query: 519 AGEKAKFGQPEINIGTIPGAGGTQRLPRYVGKSKAMEIVLT 641
A AKF G P G +Q+L R +G +KA E+ LT
Sbjct: 125 ASRGAKFMDTHARFGIFPSWGLSQKLSRIIGANKAREVSLT 165
>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
acid multifunctional protein (AIM1) identical to
gi:4337025; contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 721
Score = 105 bits (253), Expect = 2e-23
Identities = 64/181 (35%), Positives = 94/181 (51%), Gaps = 9/181 (4%)
Frame = +3
Query: 159 ENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITGNEKA 338
+ I V + V +I ++ P +N+L P+ L + D + +++ AI++ GN
Sbjct: 3 KKIGVTMEVGNDGVAVITISNPP-VNSLASPIISGLKEKFRDANQRNDVKAIVLIGNNGR 61
Query: 339 FAAGADIKEMQNNTYSSNTKQGFLREWEDIS---------NCGKPIIAAVNGFALGGGCE 491
F+ G DI N + K G L ++S + KP++AAV G ALGGG E
Sbjct: 62 FSGGFDI-----NVFQQVHKTGDLSLMPEVSVELVCNLMEDSRKPVVAAVEGLALGGGLE 116
Query: 492 LAMLCDIIYAGEKAKFGQPEINIGTIPGAGGTQRLPRYVGKSKAMEIVLTGNFFDAHEXX 671
LAM C A KA+ G PE+ +G IPG GGTQRLPR VG +KA +++L + E
Sbjct: 117 LAMACHARVAAPKAQLGLPELTLGVIPGFGGTQRLPRLVGLAKATDMILLSKSISSEEGH 176
Query: 672 K 674
K
Sbjct: 177 K 177
>At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family
protein similar to Delta 3,5-delta2,4-dienoyl-CoA
isomerase, mitochondrial (ECH1) from Rattus norvegicus
[SP|Q62651], from Homo sapiens [SP|Q13011]; contains
Pfam profile PF00378 enoyl-CoA hydratase/isomerase
family protein
Length = 278
Score = 102 bits (245), Expect = 2e-22
Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 14/185 (7%)
Frame = +3
Query: 153 SYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITGNE 332
SY+ +++ + +V + +NRP LNAL F+E KA++ D + +++ II++G
Sbjct: 5 SYKTLEIIRKNTDSSVFHLIINRPSHLNALSLDFFIEFPKALSSLDQNPDVSVIILSGAG 64
Query: 333 KAFAAGADIKEMQNNTYSSNTKQGFLREWED--------------ISNCGKPIIAAVNGF 470
K F +G D+ + + + S++ R E I C KP+IAA++G
Sbjct: 65 KHFCSGIDLNSLSSISTQSSSGNDRGRSSEQLRRKIKSMQAAITAIEQCRKPVIAAIHGA 124
Query: 471 ALGGGCELAMLCDIIYAGEKAKFGQPEINIGTIPGAGGTQRLPRYVGKSKAMEIVLTGNF 650
+GGG +L CDI Y E A F E+++ + G QRLP VG + AME+ LT
Sbjct: 125 CIGGGVDLITACDIRYCSEDAFFSIKEVDLAIVADLGTLQRLPSIVGYANAMELALTARR 184
Query: 651 FDAHE 665
F E
Sbjct: 185 FSGSE 189
>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
identical to fatty acid multifunctional protein (AtMFP2)
GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
acid beta-oxidation); contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 725
Score = 97.9 bits (233), Expect = 6e-21
Identities = 61/162 (37%), Positives = 88/162 (54%), Gaps = 6/162 (3%)
Frame = +3
Query: 198 VGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITGNEKAFAAGADIK---EM 368
V +I L P +N+L + L + + +++ AI+ITG + F+ G DI EM
Sbjct: 18 VAVITLINPP-VNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGEM 76
Query: 369 QNNTYSSNTKQGFLRE---WEDISNCGKPIIAAVNGFALGGGCELAMLCDIIYAGEKAKF 539
Q K G++ + + KP +AA++G ALGGG ELAM C + A+
Sbjct: 77 QKGNVKE-PKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQL 135
Query: 540 GQPEINIGTIPGAGGTQRLPRYVGKSKAMEIVLTGNFFDAHE 665
G PE+ +G IPG GGTQRLPR VG +KA+E++LT A E
Sbjct: 136 GLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEE 177
>At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar to
AU-binding protein/Enoyl-CoA hydratase [Homo sapiens]
GI:780241, [Mus musculus]GI:6840920; contains Pfam
profile PF00378 enoyl-CoA hydratase/isomerase family
protein
Length = 229
Score = 95.9 bits (228), Expect = 2e-20
Identities = 53/111 (47%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Frame = +3
Query: 339 FAAGADIKEMQNNTYSS-NTKQGFLRE-WEDISNCGKPIIAAVNGFALGGGCELAMLCDI 512
F AGAD+KE + + S +T LR + I P IAA+ G ALGGG E+A+ CD+
Sbjct: 31 FCAGADLKERRTMSPSEVHTYVNSLRYMFSFIEALSIPTIAAIEGAALGGGLEMALACDL 90
Query: 513 IYAGEKAKFGQPEINIGTIPGAGGTQRLPRYVGKSKAMEIVLTGNFFDAHE 665
GE A FG PE + IPGAGGTQRL R VG+S + E++ TG DA E
Sbjct: 91 RICGENAVFGLPETGLAIIPGAGGTQRLSRLVGRSVSKELIFTGRKIDAIE 141
>At1g60550.1 68414.m06816 naphthoate synthase, putative /
dihydroxynaphthoic acid synthetase, putative / DHNA
synthetase, putative contains similarity to MENB from
Escherichia coli [SP|P27290], Bacillus subtilis
[SP|P23966]; contains Pfam profile PF00378 enoyl-CoA
hydratase/isomerase family protein
Length = 337
Score = 91.5 bits (217), Expect = 5e-19
Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Frame = +3
Query: 192 KNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITGN-EKAFAAGADIKEM 368
+ + I +NRP+ NA EL +A ND DS++ II+TG KAF +G D
Sbjct: 85 EGIAKITINRPERRNAFRPQTVKELMRAFNDARDDSSVGVIILTGKGTKAFCSGGDQALR 144
Query: 369 QNNTYSSNTKQGFLREWE---DISNCGKPIIAAVNGFALGGGCELAMLCDIIYAGEKAKF 539
+ Y+ G L + I KP+IA V G+A+GGG L M+CD+ A + A F
Sbjct: 145 TQDGYADPNDVGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAIF 204
Query: 540 GQPEINIGTIPGAGGTQRLPRYVGKSKAMEIVLTGNFFDAHEXXK 674
GQ +G+ G+ + R VG KA E+ F+ A E K
Sbjct: 205 GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFMTRFYTASEAEK 249
>At2g30660.1 68415.m03739 3-hydroxyisobutyryl-coenzyme A hydrolase,
putative / CoA-thioester hydrolase, putative strong
similarity to gi:8572760; contains Pfam profile PF00388
enoyl-CoA hydratase/isomerase family protein
Length = 378
Score = 74.9 bits (176), Expect = 5e-14
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 9/155 (5%)
Frame = +3
Query: 177 VVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITGNEKAFAAGAD 356
+V K +V ++ LNRPK LNALC + L + ++ D ++ +I+ G +AF AG D
Sbjct: 8 LVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRAFCAGGD 67
Query: 357 IKEMQNNTYSSNTKQG--FLREWEDI----SNCGKPIIAAVNGFALGGGCELAMLCDIIY 518
+ + N + G F R+ + + KP ++ +NG +G G +++
Sbjct: 68 VPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHGRFRI 127
Query: 519 AGEKAKFGQPEINIGTIPGAGGT---QRLPRYVGK 614
A E F PE ++G P G + RLP + G+
Sbjct: 128 ATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGE 162
>At5g65940.1 68418.m08301 3-hydroxyisobutyryl-coenzyme A hydrolase /
CoA-thioester hydrolase (CHY1) identical to gi:8572760;
contains Pfam profile PF00388 enoyl-CoA
hydratase/isomerase family protein
Length = 378
Score = 67.7 bits (158), Expect = 7e-12
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 9/155 (5%)
Frame = +3
Query: 177 VVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITGNEKAFAAGAD 356
+V K +V ++ LNRPK LNAL + L + F+ D ++ +I+ G+ +AF AG D
Sbjct: 12 LVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGD 71
Query: 357 IKEMQNNTYSSNTKQG---FLREW---EDISNCGKPIIAAVNGFALGGGCELAMLCDIIY 518
+ + + N + G F E+ ++ K ++ +NG +GGG +++
Sbjct: 72 VAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRI 131
Query: 519 AGEKAKFGQPEINIGTIPGAGGT---QRLPRYVGK 614
A E F PE +G P G + RLP + G+
Sbjct: 132 ATENTVFAMPETALGLFPDVGASYFLSRLPGFFGE 166
>At4g31810.1 68417.m04521 enoyl-CoA hydratase/isomerase family
protein similar to CHY1 [gi:8572760]; contains Pfam
profile PF00388 enoyl-CoA hydratase/isomerase family
protein
Length = 409
Score = 67.7 bits (158), Expect = 7e-12
Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 9/170 (5%)
Frame = +3
Query: 144 STASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIIT 323
S A +E+ +V V G K+ I LN P +LNAL P+ L + ++ + I+ +++
Sbjct: 35 SDADFED-QVLVEGKAKSRAAI-LNNPSSLNALSAPMVGRLKRLYESWEENPAISFVLMK 92
Query: 324 GNEKAFAAGADIKEMQNNTYSSNTKQG---FLREWEDISNCG---KPIIAAVNGFALGGG 485
G+ K F +GAD+ + ++ NT++ F ++ + G KP IA ++G +G G
Sbjct: 93 GSGKTFCSGADVLSLYHSINEGNTEESKLFFENLYKFVYLQGTYLKPNIAIMDGVTMGCG 152
Query: 486 CELAMLCDIIYAGEKAKFGQPEINIGTIPGAGGT---QRLPRYVGKSKAM 626
+++ A +K PE+ IG P AG + RLP Y+G+ A+
Sbjct: 153 GGISLPGMFRVATDKTVLAHPEVQIGFHPDAGASYYLSRLPGYLGEYLAL 202
>At3g60510.1 68416.m06768 enoyl-CoA hydratase/isomerase family
protein similar to enoyl-CoA-hydratase, Avicennia
marina, EMBL:AF190450 [GI:6014701], CoA-thioester
hydrolase CHY1 from Arabidopsis thaliana [GI:8572760];
contains Pfam profile PF00378 enoyl-CoA
hydratase/isomerase family protein
Length = 401
Score = 64.9 bits (151), Expect = 5e-11
Identities = 57/190 (30%), Positives = 88/190 (46%), Gaps = 7/190 (3%)
Frame = +3
Query: 66 RALLGKNVLNKC-KVVSATSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNAL 242
+ LLG+ V +K + S S+K S + VE G + LNRP ALNAL
Sbjct: 5 KGLLGRIVRDKLWRFGYRRSLCSLKLTSEDLDYQVLVEGSGCSRTA---ILNRPPALNAL 61
Query: 243 CKPLFVELGKAVNDFDADSNIAAIIITGNEKAFAAGADIKEMQN-NTYSS--NTKQGFLR 413
+ L K +++ D NI +++ G+ +AF AG DI + + T S ++ F
Sbjct: 62 TTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRTRGSPDAIREFFSS 121
Query: 414 EWEDISNCG---KPIIAAVNGFALGGGCELAMLCDIIYAGEKAKFGQPEINIGTIPGAGG 584
+ I G KP +A +NG +GGG +++ A ++ F PE IG P AG
Sbjct: 122 LYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGA 181
Query: 585 TQRLPRYVGK 614
+ L G+
Sbjct: 182 SFNLSHLPGR 191
>At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolase,
putative / CoA-thioester hydrolase, putative strong
similarity to gi:8572760; contains Pfam profile PF00388
enoyl-CoA hydratase/isomerase family protein
Length = 422
Score = 64.9 bits (151), Expect = 5e-11
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 10/156 (6%)
Frame = +3
Query: 177 VVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITGNEKAFAAGAD 356
+V K +V ++ NRPK LNAL + L + ++ D ++ +++ G +AF+AG D
Sbjct: 52 LVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGD 111
Query: 357 IKEMQNNTYSSNT-------KQGFLREWEDISNCGKPIIAAVNGFALGGGCELAMLCDII 515
I + + K G+ + +S KP ++ +NG +GGG L+
Sbjct: 112 IPPIVRDILQGKLIRGAHYFKVGYTLNYV-LSTYRKPQVSILNGIVMGGGAGLSTNGRFR 170
Query: 516 YAGEKAKFGQPEINIGTIPGAGGT---QRLPRYVGK 614
A E F PE +G P G + RLP + G+
Sbjct: 171 IATENTVFAMPETALGLFPDVGASYFLSRLPGFFGE 206
>At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family
protein similar to CHY1 [gi:8572760]; contains Pfam
profile PF00388 enoyl-CoA hydratase/isomerase family
protein
Length = 387
Score = 63.7 bits (148), Expect = 1e-10
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 8/158 (5%)
Frame = +3
Query: 177 VVGSKK-NVGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITGNEKAFAAGA 353
V+G +K +V L LNRP+ LN + + +L + + ++ D I+I G +AF+AG
Sbjct: 13 VIGEEKGSVRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTGRAFSAGG 72
Query: 354 DIKEMQNNTYSSNT--KQGFLREW--EDISNCGKPIIAAVNGFALGGGCELAMLCDIIYA 521
D+K + S ++ + + W I K ++ VNG ++GGG L +
Sbjct: 73 DLKVFYHGQESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMVPMKFSVV 132
Query: 522 GEKAKFGQPEINIGTIPGAGGT---QRLPRYVGKSKAM 626
EK F PE + G G + RLP ++G+ A+
Sbjct: 133 TEKTVFATPEASFGFHTDCGFSYIHSRLPGHLGEFLAL 170
>At3g24360.1 68416.m03058 enoyl-CoA hydratase/isomerase family
protein similar to CHY1 [gi:8572760]; contains Pfam
profile PF00388 enoyl-CoA hydratase/isomerase family
protein
Length = 418
Score = 56.4 bits (130), Expect = 2e-08
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 8/166 (4%)
Frame = +3
Query: 108 VSATSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVNDF 287
+S + + ++ S E +K V + V LI L+RPKALNA+ + ++ ++++
Sbjct: 28 LSVSHRRKFSVMASGSDEFVKGNVYPN--GVALITLDRPKALNAMNLEMDLKYKSLLDEW 85
Query: 288 DADSNIAAIIITGN-EKAFAAGADIK----EMQNNTYSSNTKQGFLREWE---DISNCGK 443
+ D + +++ G+ +AF AG DIK E+ + +S ++ F E+ I+ K
Sbjct: 86 EYDPGVKCVVVEGSTSRAFCAGMDIKGVVAEILMDKNTSLVQKVFTAEYSLICKIAGYRK 145
Query: 444 PIIAAVNGFALGGGCELAMLCDIIYAGEKAKFGQPEINIGTIPGAG 581
P I+ ++G +G G L+ E+ PE IG P G
Sbjct: 146 PYISLMDGITMGFGLGLSGHGRYRVITERTVLAMPENGIGLFPDVG 191
>At4g13360.1 68417.m02089 enoyl-CoA hydratase/isomerase family
protein similar to CoA-thioester hydrolase CHY1
(beta-hydroxyisobutyryl-CoA hydrolase) [Arabidopsis
thaliana] GI:8572760; contains Pfam profile PF00378:
enoyl-CoA hydratase/isomerase family protein
Length = 381
Score = 54.4 bits (125), Expect = 7e-08
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Frame = +3
Query: 198 VGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITGN-EKAFAAGADIK---- 362
V LI L+R KALNA+ + ++ ++++++D + +I+ G+ +AF AG DIK
Sbjct: 19 VALITLDRTKALNAMNLDMDIKYKSFLDEWESDPRVKCVIVEGSTSRAFCAGMDIKGVAA 78
Query: 363 EMQNNTYSSNTKQGFLREWE---DISNCGKPIIAAVNGFALGGGCELAMLCDIIYAGEKA 533
E+Q + + ++ F E+ I+ KP I+ ++G +G G L+ E+
Sbjct: 79 EIQKDKNTPLVQKVFTAEYTLICAIAAYKKPYISLMDGITMGFGLGLSGHGRYRVITERT 138
Query: 534 KFGQPEINIGTIPGAG 581
PE IG P G
Sbjct: 139 VLAMPENGIGLFPDVG 154
>At1g65520.1 68414.m07434 enoyl-CoA hydratase/isomerase family
protein low similarity to enoyl-CoA hydratase
[Escherichia coli] GI:2764828, carnitine racemase
SP|P31551 [Escherichia coli]; contains Pfam profile
PF00378 enoyl-CoA hydratase/isomerase family protein
Length = 240
Score = 38.3 bits (85), Expect = 0.005
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +3
Query: 252 LFVELGKAVNDFDADSNIA--AIIITGNEKAFAAGADIKEMQNNTYSSNTKQGFLREW-E 422
L L +N +D + + +I T + K F+ G D+ ++N S LR
Sbjct: 27 LLDSLRSTINQIRSDPSFSQSVLITTSDGKFFSNGYDLALAESNPSLSVVMDAKLRSLVA 86
Query: 423 DISNCGKPIIAAVNGFALGGGCELAMLCDII 515
D+ + P IAAV G A GC LAM D +
Sbjct: 87 DLISLPMPTIAAVTGHASAAGCILAMSHDYV 117
>At3g08760.1 68416.m01018 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 557
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 538 SVNPRSTLAPSPEPEAPSVFP 600
SV PRS+ +PSP P PSV P
Sbjct: 493 SVPPRSSFSPSPPPRRPSVSP 513
>At5g56110.1 68418.m07000 myb family transcription factor contains
PFAM profile: Myb DNA binding domain PF00249
Length = 320
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 73 CWERMY*TSAKWYPQQAKHL*SFIAQHHTRTSRL 174
C E+ +W P++ L S+IAQH TR RL
Sbjct: 6 CCEKENVKRGQWTPEEDNKLASYIAQHGTRNWRL 39
>At4g14430.1 68417.m02226 enoyl-CoA hydratase/isomerase family
protein low siimilarity to 2-cyclohexenylcarbonyl CoA
isomerase [Streptomyces collinus] GI:8133118, enoyl-CoA
isomerase [Escherichia coli] GI:2764829; contains Pfam
profile PF00378 enoyl-CoA hydratase/isomerase family
protein
Length = 240
Score = 29.5 bits (63), Expect = 2.2
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Frame = +3
Query: 312 IIITGNEKAFAAGADIKEMQ---NNTYSSNTKQGFLREWEDIS----NCGKPIIAAVNGF 470
+I T N K F+ G D+ Q + T ++N + ++ + + P IAA+NG
Sbjct: 48 LITTANGKFFSNGFDLAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTIAALNGH 107
Query: 471 ALGGGCELAMLCDIIY-AGEKAKFGQPEINIGTIPGAGGTQRLPRYVGKSKA-MEIVLTG 644
A G LA+ D ++ ++ E++IG + + +G S A E++L+G
Sbjct: 108 AAAAGLILALSHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELLLSG 167
>At1g71740.1 68414.m08292 hypothetical protein
Length = 130
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = -1
Query: 499 IASSQPPPRAKPLTAAMMGFPQ-----LEMSSHSRRK 404
+A + PP R KPLT MG + ++SHS+RK
Sbjct: 1 MAQTVPPSRTKPLTIFKMGLASASVRLVNLASHSKRK 37
>At4g15820.1 68417.m02407 wound-responsive protein-related contains
weak similarity to KED [Nicotiana tabacum]
gi|8096269|dbj|BAA95789
Length = 460
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 401 LFCVAAVCIVLHLLNISTSRKSLLVTSDDDGSNVAV 294
+F VC VL L + + S K+ V+SD +G+N+ +
Sbjct: 92 IFAFQTVCAVLFLGDSTKSEKTPEVSSDSEGNNLVL 127
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3
Query: 374 VLHLLNISTSRKSLLVTSDDDGS 306
VL LL+ S S + LLVT+ DDG+
Sbjct: 180 VLRLLDYSRSSRHLLVTAGDDGT 202
>At4g14440.1 68417.m02227 enoyl-CoA hydratase/isomerase family
protein low similarity to PhaB [Pseudomonas putida]
GI:3253198, SP|P31551 Carnitine racemase {Escherichia
coli}; contains Pfam profile PF00378 enoyl-CoA
hydratase/isomerase family protein
Length = 238
Score = 27.9 bits (59), Expect = 6.8
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Frame = +3
Query: 306 AAIIITGNEKAFAAGADIKEMQNNTYSSNTK-----QGFLREWEDISNCGKPIIAAVNGF 470
+ +I TG+ K F+ G D+ Q+ + + + + F + + P IAA+NG
Sbjct: 46 SVLITTGHGKFFSNGFDLAWAQSAGHGAIKRMHQMVKSFKPVLAALLDLPMPTIAALNGH 105
Query: 471 ALGGGCELAMLCDIIY-AGEKAKFGQPEINIG 563
A G A+ D ++ ++ E++IG
Sbjct: 106 AAASGLMFALSHDYVFMRKDRGVLYMSEVDIG 137
>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1611
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 515 LCRRKGEIRSTRDQHWHHPRSRRHPASSQIRWQVESN 625
LC+ + E+ +T Q P+S P +SQ + +++N
Sbjct: 180 LCKTRSEMHTTLQQGGRSPKSMNSPTTSQPKDGIQNN 216
>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 641
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 598 GRRWVPPAPGMVPMLISG*PNFAFSPA 518
GRRW P GM+ +L G NF FS A
Sbjct: 294 GRRWKNPVSGMM-LLSDGQDNFTFSHA 319
>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 655
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 571 PEPEAPSVFPDTLASRKQWRSC 636
PEP A V +LA+ K WR C
Sbjct: 449 PEPPADDVKLKSLANNKMWRQC 470
>At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 938
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 366 MQNNTYSSNTKQGFLREWEDISNCG-KPIIAAVNGFALGGGCELAMLCDIIY 518
M N+ +G L+ W+ + +CG KP + + N +G CE + + I+
Sbjct: 579 MMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCN-IVVGMLCENGKMEEAIH 629
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = -3
Query: 584 ASGSGDGANVDLGLTEFRLFAG-IDDIAQHCQLTTTPKSE---TINSGNDGFPTVGDVLP 417
++G+GD G + G + +A+ C + + + GNDG T GDV
Sbjct: 149 SAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGH 208
Query: 416 FAKETLFCVAA 384
FA++ VAA
Sbjct: 209 FARDCTQKVAA 219
>At2g34750.1 68415.m04267 RNA polymerase I specific transcription
initiation factor RRN3 family protein contains Pfam
PF05327: RNA polymerase I specific transcription
initiation factor RRN3; similar to RRN3 (GI:7670100)
[Homo sapiens] similar to RNA polymerase I specific
transcription initiation factor RRN3 (Swiss-Prot:P36070)
[Saccharomyces cerevisiae]
Length = 613
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +3
Query: 225 KALNALCKPLFV--ELGKAVNDFDADSNIAAIIITGNEKAFAAGADIKEMQNNTYSSNTK 398
K+ N+ P F+ + KA D D D N A +I+ G+E + + N S K
Sbjct: 526 KSSNSFISPNFIYWSMVKATYDEDDDDNDAEVIVNGDEDSDEDDEADLDYALNKMSITPK 585
Query: 399 QGFLREWE 422
F + E
Sbjct: 586 HSFKNKME 593
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 490 SQPPPRAKPLTAAMMGFPQL 431
SQPPP P+ AMMG P +
Sbjct: 304 SQPPPGFNPMYGAMMGNPMV 323
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,554,843
Number of Sequences: 28952
Number of extensions: 374848
Number of successful extensions: 1221
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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