Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1070
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 33 0.17
04_04_1647 + 35032328-35033803 31 0.51
05_04_0337 - 20372378-20373094,20373320-20373379,20373992-203742... 30 1.2
09_02_0468 - 9608922-9610061 29 2.1
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611... 29 2.7
03_01_0564 - 4176177-4178096 29 2.7
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 28 3.6
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420... 28 4.8
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086... 28 4.8
01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498... 28 4.8
02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790 27 6.3
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 27 6.3
12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179 27 8.4
11_04_0401 - 17251759-17252208,17252545-17253022,17254235-172542... 27 8.4
04_03_0517 + 16712487-16712570,16713715-16714059,16714149-167143... 27 8.4
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 286 SGCRQPS--CQWRPSPDPGQVRSCPRCPSLHTG 378
SGCR+ WR SP ++ CP C HTG
Sbjct: 403 SGCREAGGPWTWRESPASRAMQKCPACKRTHTG 435
>04_04_1647 + 35032328-35033803
Length = 491
Score = 31.1 bits (67), Expect = 0.51
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 289 GCRQPSCQWRPSPDP-GQVRSCPRCP 363
GCR PSC W SPD R+ CP
Sbjct: 150 GCRNPSCLWIHSPDHLSDCRAASSCP 175
>05_04_0337 -
20372378-20373094,20373320-20373379,20373992-20374266,
20374358-20374619
Length = 437
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 301 PSCQWRPSPDPGQVRSCPRCPSLHTGIRSECPSPCSRP 414
P+C+ RPSP + + S H ++ EC + + P
Sbjct: 252 PACRHRPSPSSSSTTTAQQHTSFHQLLQGECSAAAAAP 289
>09_02_0468 - 9608922-9610061
Length = 379
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 298 QPSCQWRPSPDPGQVRSCPRCPSLHTGIRSE-CPSPCSRPKKR 423
QP + P P P + R C R + +G +E P P ++PK +
Sbjct: 291 QPENRVAPPPPPPRARRCLRALMMESGSDTEAAPKPKTKPKPK 333
>05_05_0036 -
21758409-21758531,21758891-21759206,21759964-21761121,
21761236-21761333
Length = 564
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 202 VRWPWICHDGWPRLFDASI*SSASLLPHVRSE 107
VR+ W+C+D RL D S+ S S ++ E
Sbjct: 416 VRFEWVCYDSAKRLLDKSLYSVLSDFAQIQDE 447
>03_01_0564 - 4176177-4178096
Length = 639
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/51 (21%), Positives = 27/51 (52%)
Frame = +3
Query: 228 RRSIYPWVLWSYLSTMTWYQRLSATILSMETLAGSWPGSELSPMSITTYGY 380
RR ++PWVL ++ ++ W+ ++ ++++ G G S + +T +
Sbjct: 467 RRFLFPWVLGGFVMSIIWFYIIANELVALLVAFGVILGINPSILGLTVLAW 517
>07_03_0635 +
20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 225 ARRSIYPWVLWSYLSTMTWYQRLSATILSMETLAGSW--PGSELSPMSITTYGYPF 386
+R+ I PW +W Y ++ Y + ++ E LA W P ++ S +S T G F
Sbjct: 706 SRKDIKPWWIWGYWTSPMMYSNNALSV--NEFLASRWAIPNND-SSISAPTIGKAF 758
>04_04_1076 -
30639835-30640898,30641613-30641915,30642008-30642068,
30643076-30644380
Length = 910
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 289 GCRQPSCQWRPSPDPGQVRSCPRCPSLHTGIRSECPSPCSRPKKR 423
G PSC+ R + S R S T + E P+P +RP++R
Sbjct: 629 GTAAPSCRHRSRRTDKRPSSSGRHGSGRTANKHERPAPATRPRQR 673
>04_04_0326 -
24407201-24407374,24407397-24407460,24408266-24408689,
24408885-24409057,24409178-24409275,24409723-24409853,
24410053-24410174,24411091-24411245,24411976-24412081,
24412328-24412419,24412499-24412620,24413444-24413544,
24413636-24413849,24414173-24414311,24415228-24415584
Length = 823
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -1
Query: 229 LAVWPSRVQVRWPWICHDGWPRLFDASI*SSASLLPHVRSERLDI 95
LAV PS PW CH R+ +A +S P R E +
Sbjct: 731 LAVTPSMFTDHLPWRCHYAMQRVLEAQTAASCPDSPESRIELFSV 775
>01_06_1252 -
35748000-35748173,35748243-35748375,35749771-35749847,
35750465-35750509,35750584-35750679,35751125-35751130,
35751259-35751388,35751510-35751706
Length = 285
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 276 SSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN-QVLLFFRTYA 112
SS G+ + +D I SG G A G GY+ PQSN +L+ +++A
Sbjct: 117 SSKAGDGSVKKDT-IGPHSGASSSSAQGMVGAYTQGMGYMQPQSNFHILVVLQSFA 171
>02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790
Length = 192
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 178 DGWPRL-FDASI*SSASLLPHVRSERLDIP 92
DG R+ FDAS S +L+P +RS R ++P
Sbjct: 131 DGLRRINFDASTNSMVALVPRLRSSRPELP 160
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 253 CGVTCQR*LGTSGCRQPSCQWRPSPDPGQVRSCPRCPSL 369
C + CQR R+P C P P P + CP C +L
Sbjct: 577 CNLPCQR------VREPPCS-HPCPLPCHLNDCPPCKAL 608
>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
Length = 312
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +1
Query: 319 PSPDPGQVRSCPRCPSLHTGIRSECPSPCSRPKKR*C 429
PSP RS P P T + SPC P+ C
Sbjct: 8 PSPSLPPSRSSPHVPPCSTLLHQAPTSPCQAPRPTSC 44
>11_04_0401 -
17251759-17252208,17252545-17253022,17254235-17254290,
17254489-17255019
Length = 504
Score = 27.1 bits (57), Expect = 8.4
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -1
Query: 352 DSSEPGQDPARVSIDKMVADNRWYQVIVD 266
D+ G + +V +D+ +AD+RW ++ +
Sbjct: 254 DNRREGWNNVKVRLDRAIADDRWRDIVTN 282
>04_03_0517 + 16712487-16712570,16713715-16714059,16714149-16714301,
16714889-16714972,16715426-16715479,16715552-16715647,
16716163-16716258,16716941-16717086,16717650-16717799,
16717889-16718018,16718128-16718787,16718881-16718979,
16719058-16719210,16719323-16720054,16720338-16720640
Length = 1094
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/43 (25%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +1
Query: 76 DRRLEKVYQAVRSVRAEEEKHLIRLRRQITSASHRGIST-AIE 201
++ EK YQ + +++ ++ ++ L ++++ +SH +T AIE
Sbjct: 1001 EQETEKAYQEIDNLKKNYDQEIVALNQRLSESSHHQETTLAIE 1043
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,245,703
Number of Sequences: 37544
Number of extensions: 339123
Number of successful extensions: 1166
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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