Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1070
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 33 0.087
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 33 0.087
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 33 0.087
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 33 0.087
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 33 0.087
Z46791-7|CAA86760.2| 473|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z95559-17|CAL44975.1| 331|Caenorhabditis elegans Hypothetical p... 27 7.6
Z81125-5|CAB03381.2| 398|Caenorhabditis elegans Hypothetical pr... 27 7.6
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 27 7.6
AF408760-1|AAO27839.1| 318|Caenorhabditis elegans unknown prote... 27 7.6
Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z69661-6|CAA93492.4| 299|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z46381-10|CAE17898.2| 366|Caenorhabditis elegans Hypothetical p... 27 10.0
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 33.5 bits (73), Expect = 0.087
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -1
Query: 409 DYMVMDIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 263
DY+ +I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.46
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -2
Query: 321 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 142
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 141 QVLLFFRTYAPNGLIYLL 88
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 33.5 bits (73), Expect = 0.087
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -1
Query: 409 DYMVMDIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 263
DY+ +I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.46
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -2
Query: 321 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 142
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 141 QVLLFFRTYAPNGLIYLL 88
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 33.5 bits (73), Expect = 0.087
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -1
Query: 409 DYMVMDIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 263
DY+ +I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 565 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 607
Score = 31.1 bits (67), Expect = 0.46
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -2
Query: 321 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 142
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 679 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 734
Query: 141 QVLLFFRTYAPNGLIYLL 88
++ L F T++P+GL++ +
Sbjct: 735 KISLSFLTFSPHGLLFFV 752
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 33.5 bits (73), Expect = 0.087
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -1
Query: 409 DYMVMDIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 263
DY+ +I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.46
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -2
Query: 321 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 142
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 141 QVLLFFRTYAPNGLIYLL 88
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 33.5 bits (73), Expect = 0.087
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -1
Query: 409 DYMVMDIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 263
DY+ +I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.46
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -2
Query: 321 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 142
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 141 QVLLFFRTYAPNGLIYLL 88
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>Z46791-7|CAA86760.2| 473|Caenorhabditis elegans Hypothetical
protein C09G5.1 protein.
Length = 473
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 246 WVLWSYLSTMTWYQ-RLSATILSMETLAGSWPGSELSPMSITTYGY 380
+++W Y + WY R+S T+L M+ LA S+ + I +Y Y
Sbjct: 144 FLVWIYPNGTVWYDCRISLTVLCMQDLARYPLDSQNCGLRILSYAY 189
>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical
protein F20B10.1 protein.
Length = 1180
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 409 DYMVMDIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQV 275
D ++ I +G +V+ D G + P+R+S K + D RW+++
Sbjct: 171 DVLIAQIIHGTVHVIFDFGSLT-----PSRISAGKALDDGRWHEM 210
>Z95559-17|CAL44975.1| 331|Caenorhabditis elegans Hypothetical
protein Y41E3.19 protein.
Length = 331
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = +1
Query: 208 LLRARLRGDQFIPGFCGVTCQR*LGTSGCRQPSCQWRPSPDPGQVRSCPRCPSL-HTGIR 384
LL R D ++ C + GT+GC C W ++ PR S+
Sbjct: 135 LLNTIGRCDHYLCTACYGLVKNSDGTNGCSSRQCFWNGENSETEICQRPRARSISEMSSN 194
Query: 385 SECPSPCS 408
S C CS
Sbjct: 195 SLCSEDCS 202
>Z81125-5|CAB03381.2| 398|Caenorhabditis elegans Hypothetical
protein T22A3.3a protein.
Length = 398
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 298 QPSCQWRPSPDPGQVRSCPRCPSLHTGIRSE 390
QPS W S D G + S P +G+RS+
Sbjct: 119 QPSNFWESSQDSGVLSSLSSSPQQRSGLRSQ 149
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +1
Query: 280 GTSGCRQPSCQWRPSPDPGQVRSCPRCPSLHTG 378
G+ G P P PGQ SC CP TG
Sbjct: 264 GSDGLPGPHGGTGPRGPPGQPGSCDHCPPPRTG 296
>AF408760-1|AAO27839.1| 318|Caenorhabditis elegans unknown protein
protein.
Length = 318
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 298 QPSCQWRPSPDPGQVRSCPRCPSLHTGIRSE 390
QPS W S D G + S P +G+RS+
Sbjct: 39 QPSNFWESSQDSGVLSSLSSSPQQRSGLRSQ 69
>Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical
protein R06C7.8 protein.
Length = 987
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 147 IEASNNLGQPSWHIHGHRTCTLEGQTAR 230
+E +NN+ P+WHI TC L Q AR
Sbjct: 777 LEYANNMKDPNWHI----TCFLITQMAR 800
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/59 (23%), Positives = 24/59 (40%)
Frame = +1
Query: 253 CGVTCQR*LGTSGCRQPSCQWRPSPDPGQVRSCPRCPSLHTGIRSECPSPCSRPKKR*C 429
C TCQ+ TS C P+ P + +C + + T +C C + ++ C
Sbjct: 105 CQSTCQQSCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAAVQCVPQCQQQCQQQC 163
>Z69661-6|CAA93492.4| 299|Caenorhabditis elegans Hypothetical
protein F48F7.2 protein.
Length = 299
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 70 FEDRRLEKVYQAVRSVRAEEEK 135
+ DRR E+V A+ SVR E EK
Sbjct: 32 YVDRRFEEVRNAIASVRGEIEK 53
>Z46381-10|CAE17898.2| 366|Caenorhabditis elegans Hypothetical
protein M01F1.9 protein.
Length = 366
Score = 26.6 bits (56), Expect = 10.0
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = -2
Query: 318 SPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGP---QEYRFD---GRGYATMAGRGYL 157
+P +R PTT+ TKS+ T S+ P Q GP +++ D R RG+L
Sbjct: 62 TPSSRPRPTTSVTKSAATVYSSHPNILFCELQLGPGQTKQFVCDIPLSRNGIPPTFRGHL 121
Query: 156 TPQSNQV 136
SN++
Sbjct: 122 VKYSNRI 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,495,642
Number of Sequences: 27780
Number of extensions: 260611
Number of successful extensions: 802
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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