Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1069
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   180   7e-47
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   180   7e-47
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    38   0.001
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    26   3.3  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   4.4  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.8  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    25   7.6  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  180 bits (439), Expect = 7e-47
 Identities = 81/123 (65%), Positives = 99/123 (80%)
 Frame = +2

Query: 56  RHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 235
           R +K+VGLGFKTP EAI G Y+DKKCPF G VSIRGRILTG V   KM RTI+IRR+YLH
Sbjct: 30  RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLH 89

Query: 236 YLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKVSKGKGSQEV 415
           ++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFNVL+V K     + 
Sbjct: 90  FIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRVVKHTEGPKQ 148

Query: 416 FEK 424
           F K
Sbjct: 149 FGK 151


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  180 bits (439), Expect = 7e-47
 Identities = 81/123 (65%), Positives = 99/123 (80%)
 Frame = +2

Query: 56  RHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 235
           R +K+VGLGFKTP EAI G Y+DKKCPF G VSIRGRILTG V   KM RTI+IRR+YLH
Sbjct: 30  RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLH 89

Query: 236 YLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKVSKGKGSQEV 415
           ++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFNVL+V K     + 
Sbjct: 90  FIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRVVKHTEGPKQ 148

Query: 416 FEK 424
           F K
Sbjct: 149 FGK 151


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +2

Query: 176 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 355
           G+V    M +T  +R     + P   ++  +++N  V       +  +GD VTI  CRP 
Sbjct: 7   GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63

Query: 356 SKTVRFNVLKV 388
           S T RF ++K+
Sbjct: 64  SATKRFEIIKI 74


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 235 VKVIAADHDSSLHLHFLNDAGEDAAADRNVTSEGTL 128
           V   +  HDS+LH +FLN   +D   +   T+E  L
Sbjct: 24  VLAFSEHHDSALHSYFLNARVKDVILESLRTTEEKL 59


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 311 VEIGDIVTIGECRPLSKTVRFNVLKVS 391
           V +GDIVTI  C  +    R +VL ++
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVLPLA 140


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 217 DHDSSLHL--HFLNDAGEDAAADRNVTSEGTLLVNVGT 110
           +H   +H+  H L D  + +  DRN  +EGT   N  T
Sbjct: 128 NHKLEIHVYKHILPDLPQSSEVDRNSETEGTREENSNT 165


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 5   RPPFS*TGKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVS 154
           +P  S T    +K   ++  +++ L FK P  +     +D+K     NVS
Sbjct: 346 KPKLSTTQSTPVKPASLQSEEDIQLSFKQPELSASSAELDEKLKSQCNVS 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,135
Number of Sequences: 5004
Number of extensions: 34256
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)