Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1069
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 177 3e-45
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 169 7e-43
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 165 2e-41
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 165 2e-41
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 153 7e-38
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 110 5e-25
08_02_0383 - 16539472-16539633,16543044-16543205 44 5e-05
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 37 0.009
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 32 0.26
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 29 2.5
11_06_0289 - 21969248-21973516 28 4.3
11_06_0185 + 21018045-21022307 28 4.3
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 27 7.5
08_02_1393 - 26706198-26706592,26707055-26707301,26707407-267082... 27 7.5
09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597... 27 10.0
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 27 10.0
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 177 bits (432), Expect = 3e-45
Identities = 83/123 (67%), Positives = 97/123 (78%), Gaps = 1/123 (0%)
Frame = +2
Query: 23 TGKGGMKRKD-MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKM 199
+GKG K R KN+GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM
Sbjct: 13 SGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKM 72
Query: 200 QRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNV 379
RTI++RR+YLH++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNV
Sbjct: 73 NRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNV 131
Query: 380 LKV 388
+KV
Sbjct: 132 IKV 134
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 169 bits (412), Expect = 7e-43
Identities = 88/142 (61%), Positives = 102/142 (71%), Gaps = 11/142 (7%)
Frame = +2
Query: 26 GKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQR 205
GKGG R KN+GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM R
Sbjct: 29 GKGGN-----RFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNR 83
Query: 206 TIVIRRDYLHYLPKYNR-------FEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKT 364
TI++RR+YLH++ KY R +EKRH N+ H+SPCFR V+ GD V IG+CRPLSKT
Sbjct: 84 TIIVRRNYLHFVKKYQRQVNLVAGYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKT 142
Query: 365 VRFNVLKV----SKGKGSQEVF 418
VRFNVLKV SK ++VF
Sbjct: 143 VRFNVLKVIPAGSKSGAGKKVF 164
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 165 bits (401), Expect = 2e-41
Identities = 83/132 (62%), Positives = 97/132 (73%), Gaps = 10/132 (7%)
Frame = +2
Query: 23 TGKGGMKRKD-MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKM 199
+GKG K R K++GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM
Sbjct: 22 SGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKM 81
Query: 200 QRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRP 352
RTI++RR+YLH++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRP
Sbjct: 82 NRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRP 140
Query: 353 LSKTVRFNVLKV 388
LSKTVRFNVLKV
Sbjct: 141 LSKTVRFNVLKV 152
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 165 bits (401), Expect = 2e-41
Identities = 83/132 (62%), Positives = 97/132 (73%), Gaps = 10/132 (7%)
Frame = +2
Query: 23 TGKGGMKRKD-MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKM 199
+GKG K R K++GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM
Sbjct: 22 SGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKM 81
Query: 200 QRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRP 352
RTI++RR+YLH++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRP
Sbjct: 82 NRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRP 140
Query: 353 LSKTVRFNVLKV 388
LSKTVRFNVLKV
Sbjct: 141 LSKTVRFNVLKV 152
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 153 bits (371), Expect = 7e-38
Identities = 83/147 (56%), Positives = 97/147 (65%), Gaps = 25/147 (17%)
Frame = +2
Query: 23 TGKGGMKRKD-MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKM 199
+GKG K R K++GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM
Sbjct: 22 SGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKM 81
Query: 200 QRTIVIRRDYLHYLPKYN------------------------RFEKRHRNMSVHLSPCFR 307
RTI++RR+YLH++ KY R+EKRH N+ H+SPCFR
Sbjct: 82 NRTIIVRRNYLHFVKKYQRQVNNYGFYLCFFSFFFPISDLGCRYEKRHSNIPAHVSPCFR 141
Query: 308 DVEIGDIVTIGECRPLSKTVRFNVLKV 388
V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 142 -VKEGDHVIIGQCRPLSKTVRFNVLKV 167
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 110 bits (265), Expect = 5e-25
Identities = 51/79 (64%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Frame = +2
Query: 23 TGKGGMKRKD-MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKM 199
+GKG K R K++GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM
Sbjct: 22 SGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKM 81
Query: 200 QRTIVIRRDYLHYLPKYNR 256
RTI++RR+YLH++ KY R
Sbjct: 82 NRTIIVRRNYLHFVKKYQR 100
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 44.4 bits (100), Expect = 5e-05
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +2
Query: 170 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 349
+ G+V KMQ+++V+ D L + YNR+ KR H D IGD V + R
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAHDET--EDCNIGDRVKLDPSR 61
Query: 350 PLSKTVRFNVLKV 388
PLSK + V ++
Sbjct: 62 PLSKRKHWVVAEI 74
>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 36.7 bits (81), Expect = 0.009
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +2
Query: 170 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 349
LTG V K +T+ + L PKY R E+ + H P ++GD+V + R
Sbjct: 972 LTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAH-DPD-NQFKVGDVVELRRSR 1029
Query: 350 PLSKTVRF 373
P+SKT F
Sbjct: 1030 PISKTKHF 1037
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 31.9 bits (69), Expect = 0.26
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 359 WTKVCIRRSLQYHQSPRP*SKATNARTYSCAVSRTY 252
W C RR Y +SP P + R+YS + SR+Y
Sbjct: 129 WKNRCYRRGRSYSRSPSPRRGRSRGRSYSRSRSRSY 164
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 104 IEGTYIDKKCPFTGNVSIRGRILTGVVQKM-KMQRTIVIRRDYLHYLPKY 250
+ GT PFTG++S G + + KM + +V +DYLH K+
Sbjct: 461 VRGTEDAPITPFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 182 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 316
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1251 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1295
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 182 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 316
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1249 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1293
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 35 GMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGR 166
G ++RH ++G E T +DK+ P +G S+ GR
Sbjct: 121 GAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGR 164
>08_02_1393 -
26706198-26706592,26707055-26707301,26707407-26708249,
26708420-26709091
Length = 718
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 93 PERRLRVPTLTRSVPSLVTF 152
PERR VP RS+ LVTF
Sbjct: 155 PERRRNVPVAQRSLEGLVTF 174
>09_06_0204 -
21559024-21559287,21559445-21559567,21559665-21559718,
21559800-21560721,21560803-21561212,21561284-21561408,
21561524-21561571,21561668-21561789,21562008-21562099,
21562242-21562429,21562582-21562696,21562780-21562863,
21562994-21563087,21563393-21563510,21563805-21563930,
21564002-21564074,21564209-21564296,21564674-21564744,
21564839-21564918,21565004-21565065,21565169-21565310,
21565410-21565510,21565600-21565644,21565725-21565789,
21566088-21566163,21566246-21566300,21566416-21566773
Length = 1366
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 242 PKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIG 340
P+Y +K R+ S+ + C+ +I D+V +G
Sbjct: 197 PEYKNAQKLSRHPSLQIGGCYEVHDIEDLVRVG 229
>04_04_1571 +
34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 22 NRXRWHEEEGHASP*ECWFRLQNSQRGD*GY 114
N+ W E G +SP WF+L GD Y
Sbjct: 665 NQVPWDPESGGSSPTAAWFKLFWQYIGDCSY 695
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,144,141
Number of Sequences: 37544
Number of extensions: 239918
Number of successful extensions: 500
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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