Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1069
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             210   6e-55
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.051
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)         33   0.089
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        28   4.4  
SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)                     27   5.9  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  210 bits (512), Expect = 6e-55
 Identities = 95/136 (69%), Positives = 114/136 (83%), Gaps = 12/136 (8%)
 Frame = +2

Query: 41  KRKDMRHHKNVGLGFKTP------------REAIEGTYIDKKCPFTGNVSIRGRILTGVV 184
           K+KD+R  +NVGLGFKTP            REAIEGTYIDKKCPFTGNVSIRGRILTG+ 
Sbjct: 28  KKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEGTYIDKKCPFTGNVSIRGRILTGIC 87

Query: 185 QKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKT 364
           + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++ H SPCFRD+ +GD++T+G+CRPLSKT
Sbjct: 88  RSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLAAHCSPCFRDIALGDLITVGQCRPLSKT 147

Query: 365 VRFNVLKVSKGKGSQE 412
           VRFNVLKVSKGK + +
Sbjct: 148 VRFNVLKVSKGKSTMK 163


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 34.3 bits (75), Expect = 0.051
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +2

Query: 320 GDIVTIGECRPLSKTVRFNVLKV 388
           GD+V I ECRPLSK  +FNV ++
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEI 51


>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
          Length = 208

 Score = 33.5 bits (73), Expect = 0.089
 Identities = 22/83 (26%), Positives = 39/83 (46%)
 Frame = +2

Query: 140 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 319
           T   + R ++  G+V   KM +TI +  +     P Y +   +   +  H      +  +
Sbjct: 5   TAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDEN--NEAGM 62

Query: 320 GDIVTIGECRPLSKTVRFNVLKV 388
           GD V I E RPLS T R+ ++++
Sbjct: 63  GDRVRIMETRPLSATKRWRLVEI 85


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 122 QCRYPQSPLWEF*SLNQHSYGDACP 48
           +C   QS LWE  SL QH Y +  P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 313 HVPEARRQMHGHIPVPFLEP 254
           HV +A R  HG++P+P L P
Sbjct: 82  HVDQACRSFHGNLPLPVLAP 101


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 167 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 304
           I+  VV K K  +  VI RD+  Y     ++ +R     VH SP F
Sbjct: 64  IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109


>SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)
          Length = 732

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 379 NIESNCFGQRSAFADRYNIT-NLHVPEARRQMHGHIPVPFLEPIVFG*VVKVIAADHDSS 203
           N+ ++     S  +  YNIT NLH+ E         P+P      FG +  + A D++ S
Sbjct: 76  NLMADLSSDGSEVSKTYNITINLHLMEVLSSDGNESPIPRKGTFDFGGMQDIAALDYEES 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,756,084
Number of Sequences: 59808
Number of extensions: 266441
Number of successful extensions: 629
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)